ci: Fix tests for napari from repository (#1148)

<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit

- **New Features**
  - Added support for `napari` version 0.5.0.
  - Introduced new environment configuration for `napari5`.

- **Bug Fixes**
- Updated test configurations to ensure compatibility with `PySide6` and
other Python versions.
  - Improved handling of `edit_request` signals in the Colormap Creator.

- **Chores**
  - Adjusted GitHub workflow triggers and updated Python version matrix.
- Refined test skipping markers for `PySide6` to enhance test
management.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->

Author: Czaki

.github/workflows/test_napari_repo.yml

@@ -5,6 +5,11 @@ on:
     - cron: '0 10 * * 1,3,5'  # every 24 hours
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
+  pull_request:
+    paths:
+      - '.github/workflows/test_napari_repo.yml'
+      - pyproject.toml
+      - tox.ini
 
 jobs:
   download_data:
@@ -29,7 +34,7 @@ jobs:
       fail-fast: false
       matrix:
         platform: [ ubuntu-22.04 ]
-        python: ['3.8', '3.9' , '3.10', '3.11']
+        python: ['3.9' , '3.10', '3.11', '3.12']
         napari_version: ['repo']
     steps:
       - uses: actions/checkout@v4

.github/workflows/test_napari_widgets.yml

@@ -27,7 +27,7 @@ jobs:
     with:
       python_version: "3.10"
       os: ${{ matrix.os }}
-      napari: "napari419"
+      napari: "napari5"
       qt_backend: ${{ matrix.qt_backend }}
       timeout: 10
 

package/PartSeg/common_gui/colormap_creator.py

@@ -381,7 +381,8 @@ class for preview single colormap. Witch checkbox for change selection.
 
     selection_changed = Signal(str, bool)
     """checkbox selection changed (name)"""
-    edit_request = Signal([str], [Colormap])
+    edit_request_name = Signal(str)
+    edit_request_colormap = Signal(Colormap)
     """send after pressing edit signal (name) (ColorMap object)"""
     remove_request = Signal(str)
     """Signal with name of colormap (name)"""
@@ -419,9 +420,9 @@ def __init__(
         layout.addWidget(self.label)
         self.setLayout(layout)
         self.checked.stateChanged.connect(self._selection_changed)
-        self.edit_btn.clicked.connect(partial(self.edit_request.emit, name))
+        self.edit_btn.clicked.connect(partial(self.edit_request_name.emit, name))
         if len(colormap.controls) < 20:
-            self.edit_btn.clicked.connect(partial(self.edit_request[Colormap].emit, colormap))
+            self.edit_btn.clicked.connect(partial(self.edit_request_colormap.emit, colormap))
             self.edit_btn.setToolTip("Create colormap base on this")
         else:
             self.edit_btn.setDisabled(True)
@@ -547,7 +548,7 @@ def refresh(self):
                 cache_dict[el.name] = el
             else:
                 el.deleteLater()
-                el.edit_request[Colormap].disconnect()
+                el.edit_request_colormap.disconnect()
                 el.remove_request.disconnect()
                 el.selection_changed.disconnect()
         selected = self.get_selected()
@@ -560,7 +561,7 @@ def refresh(self):
                 widget.set_chosen(name in selected)
             else:
                 widget = self._create_colormap_preview(colormap, name, removable)
-                widget.edit_request[Colormap].connect(self.edit_signal)
+                widget.edit_request_colormap.connect(self.edit_signal)
                 widget.remove_request.connect(self._remove_request)
                 widget.selection_changed.connect(self.change_selection)
             layout.addWidget(widget, i // columns, i % columns)

package/tests/conftest.py

@@ -279,11 +279,16 @@ def pytest_collection_modifyitems(session, config, items):
     items[:] = image_tests + core_tests + other_test
 
 
-def pytest_runtest_setup(item):
+def pytest_runtest_setup(item):  # pragma: no cover
     if platform.system() == "Windows" and any(item.iter_markers(name="windows_ci_skip")):
         pytest.skip("glBindFramebuffer with no OpenGL")
     if platform.system() == "Windows" and any(item.iter_markers(name="pyside_skip")):
         import qtpy
 
         if qtpy.API_NAME == "PySide2":
             pytest.skip("PySide2 problems")
+    if any(item.iter_markers(name="pyside6_skip")):
+        import qtpy
+
+        if qtpy.API_NAME == "PySide6":
+            pytest.skip("PySide6 problems")

package/tests/test_PartSeg/test_base_widgets.py

@@ -106,6 +106,7 @@ def test_napari_viewer_additional_layers_empty(self, qtbot, part_settings, monke
         information_mock.assert_called_once()
 
     @pytest.mark.windows_ci_skip()
+    @pytest.mark.pyside6_skip()
     def test_napari_viewer_additional_layers(self, qtbot, part_settings, monkeypatch):
         main_window = BaseMainWindow(settings=part_settings)
         qtbot.addWidget(main_window)

pyproject.toml

@@ -205,7 +205,8 @@ markers = [
     "enabledialog: Allow to use dialog in test",
     "no_patch_add_layer: Do not patch napari viewer",
     "windows_ci_skip: Skip test when running on windows CI",
-    "pyside_skip: Skip test when using pyside qt backend",
+    "pyside_skip: Skip test when using pyside2 qt backend",
+    "pyside6_skip: Skip test when using pyside6 qt backend"
 ]
 
 [tool.coverage.paths]

tox.ini

@@ -4,7 +4,7 @@
 # and then run "tox" from this directory.
 
 [tox]
-envlist = py{38,39,310,311,312}-{PyQt5,PySide2,PyQt6,PySide6}-all, py{38,39,310,311,312}-{PyQt5,PySide2,PyQt6,PySide6}-napari_{417,418,419,repo}
+envlist = py{38,39,310,311,312}-{PyQt5,PySide2,PyQt6,PySide6}-all, py{39,310,311,312}-{PyQt5,PyQt6}-napari_{417,418,419,5,repo}, py{39,310}-PySide2-napari_{417,418,419,5,repo}
 toxworkdir=/tmp/tox
 
 [gh-actions]
@@ -22,6 +22,7 @@ NAPARI =
     napari417: napari_417
     napari418: napari_418
     napari419: napari_419
+    napari5: napari_5
     repo: napari_repo
 BACKEND =
     pyqt: PyQt5
@@ -39,7 +40,8 @@ deps =
     PySide2: PySide2!=5.15.0
     PyQt6: PyQt6
     # fix PySide6 when a new napari release is out
-    PySide6: PySide6<6.3.2
+    PySide6: PySide6<6.3.2; python_version < "3.10"
+    PySide6: PySide6; python_version >= "3.10"
     PySide2: npe2!=0.2.2
     imageio != 2.22.1
     pytest-json-report
@@ -71,18 +73,20 @@ deps=
     pytest-json-report
     lxml_html_clean
 
-[testenv:py{38,39,310,311,312}-{PyQt5,PySide2,PyQt6,PySide6}-napari_{417,418,419,repo}]
+[testenv:py{38,39,310,311,312}-{PyQt5,PySide2,PyQt6,PySide6}-napari_{417,418,419,5,repo}]
 deps =
     {[testenv]deps}
-    417: napari==0.4.17
-    417: pydantic<2
-    418: napari==0.4.18
-    418: pydantic<2
-    419: napari==0.4.19.post1
-    repo: git+https://github.com/napari/napari.git
+    napari_417: napari==0.4.17
+    napari_417: pydantic<2
+    napari_418: napari==0.4.18
+    napari_418: pydantic<2
+    napari_419: napari==0.4.19.post1
+    napari_5: napari==0.5.0
+    napari_repo: git+https://github.com/napari/napari.git
+    numpy<2
 commands =
-    !repo: python -m pytest -v package/tests/test_PartSeg/test_napari_widgets.py --json-report --json-report-file={toxinidir}/report-{envname}-{sys_platform}.json
-    repo: python -m pytest --json-report --json-report-file={toxinidir}/report-{envname}-{sys_platform}.json
+    !napari_repo: python -m pytest -v package/tests/test_PartSeg/test_napari_widgets.py --json-report --json-report-file={toxinidir}/report-{envname}-{sys_platform}.json
+    napari_repo: python -m pytest package/tests --json-report --json-report-file={toxinidir}/report-{envname}-{sys_platform}.json
 
 [testenv:py{38,39,310,311,312}-PyQt5-coverage]
 deps =