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183 lines (145 loc) · 6.29 KB
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<!-- ############################################################################################################################## -->
<!-- # John Wiley & Sons, Inc. # -->
<!-- # # -->
<!-- # Book: Algorithms in Bioinformatics: Theory and Implementation # -->
<!-- # Author: Dr. Paul A. Gagniuc # -->
<!-- # # -->
<!-- # Institution: # -->
<!-- # University Politehnica of Bucharest # -->
<!-- # Faculty of Engineering in Foreign Languages # -->
<!-- # Department of Engineering in Foreign Languages # -->
<!-- # # -->
<!-- # Area: European Union # -->
<!-- # Date: 04/01/2021 # -->
<!-- # # -->
<!-- # Cite this work as: # -->
<!-- # Paul A. Gagniuc. Algorithms in Bioinformatics: Theory and Implementation. John Wiley & Sons, 2021, ISBN: 9781119697961. # -->
<!-- # # -->
<!-- ############################################################################################################################## -->
<canvas id="bio" height="300" width="1100"></canvas>
<script>
//Spectral forecast model for signals
var t = '';
var tA = [];
var tB = [];
var A ='10.3,23.4,44.8,63.2,44.1,35.1,46.5';
var B ='18.8,43.1,52.2,45.5,46.8,46.6,67.9';
var P ='18.8,43.1,52.2,45.5,46.8,46.6,67.9';
var tA = A.split(',');
var tB = B.split(',');
var maxA = Math.max.apply(null, tA);
var maxB = Math.max.apply(null, tB);
var tP = P.split(',');
var max = Math.max(maxA, maxB)
Chart(forecast(), '#000000', 'y');
function forecast(){
var t = '';
for(var d=0; d<max; d++) {
var tmp = spectral(d);
t+=tmp;
if(d<max-1){t+=',';}
}
return t;
}
function spectral(d){
var M='';
for(var i=0; i<tA.length; i++) {
var tmp=((d/maxA)*tA[i])+(((max-d)/maxB)*tB[i]);
M+=tmp.toFixed(2);
if(i<tA.length-1){M+=','}
}
return index(M);
}
function index(M){
var u=0;
var k=0;
var h=0;
var tM = M.split(',');
for(var i=0; i<tM.length; i++) {
u+=(Number(tP[i])*Number(tM[i])); //(Pi*Mi)
k+=Number(tP[i])**2; //(Pi^2)
h+=Number(tM[i])**2; //(Mi^2)
}
//s[d] = (Pi*Mi)^2 / ((Pi^2) * (Mi^2))
return u**2/(k*h);
}
// just a chart
function Chart(q,c,e) {
var s = q.split(",");
var mx = Math.max.apply(null, s);
var mn = Math.min.apply(null, s);
var canvas = document.getElementById('bio');
var w = canvas.width;
var h = canvas.height;
if (canvas.getContext) {
var ctx = canvas.getContext('2d');
if(e=='y'){ctx.clearRect(0, 0, w, h);}
ctx.moveTo(0, 0);
ctx.beginPath();
for (var i=0; i<=s.length-1; i++)
{
var y = (h-80) - ((h-80) / (mx-mn)) * (s[i]-mn);
var x = ((w-80) / s.length) * i;
ctx.lineTo(x+40, y+40);
ctx.font = "20px Arial";
if(i==0){
ctx.textAlign = 'left';
ctx.fillText(Number(s[i]).toFixed(5), x+45, y+60);
}
if(i==s.length-1){
ctx.textAlign = 'right';
ctx.fillText(Number(s[i]).toFixed(5), x+35, y+60);
}
}
ctx.lineWidth = 2;
ctx.strokeStyle = c;
ctx.stroke();
//left vertical line
ctx.moveTo(x+40, 0);
ctx.lineTo(x+40, h);
ctx.stroke();
//right vertical line
ctx.moveTo(40, 0);
ctx.lineTo(40, h);
ctx.stroke();
//top line
ctx.moveTo(40, 1);
ctx.lineTo(x+40, 1);
ctx.stroke();
//bottom line
ctx.moveTo(40, h-1);
ctx.lineTo(x+40, h-1);
ctx.stroke();
//text
var text = 'Model B';
var dim = ctx.measureText(text).width;
ctx.save();
ctx.translate((40/2)+10,(h/2)+(dim/2)+14);
ctx.rotate(Math.PI + (Math.PI/2));
ctx.font = "30px Arial";
ctx.fillStyle = "#000000";
ctx.textAlign = "left";
ctx.fillText(text, 0, 0);
ctx.restore();
text = 'Model A';
dim = ctx.measureText(text).width
ctx.save();
ctx.translate(x+40+10,(h/2)-(dim/2)-14);
ctx.rotate(Math.PI / 2);
ctx.font = "30px Arial";
ctx.fillStyle = "#000000";
ctx.textAlign = "left";
ctx.fillText(text, 0, 0);
ctx.restore();
text = 'Model P vs M';
dim = ctx.measureText(text).width;
ctx.save();
ctx.translate((w/2)-(dim/2)-30,h-10);
ctx.font = "30px Arial";
ctx.fillStyle = "#000000";
ctx.textAlign = "left";
ctx.fillText(text, 0, 0);
ctx.restore();
}
}
</script>