idc-index/.pre-commit-config.yaml at main · ImagingDataCommons/idc-index · GitHub

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ci:
  autoupdate_commit_msg: "chore: update pre-commit hooks"
  autofix_commit_msg: "style: pre-commit fixes"

repos:
  - repo: https://github.com/adamchainz/blacken-docs
    rev: "1.20.0"
    hooks:
      - id: blacken-docs
        additional_dependencies: [black==24.*]

  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: "v6.0.0"
    hooks:
      - id: check-added-large-files
      - id: check-case-conflict
      - id: check-merge-conflict
      - id: check-symlinks
      - id: check-yaml
      - id: debug-statements
      - id: end-of-file-fixer
      - id: mixed-line-ending
      # - id: name-tests-test
      #   args: ["--pytest-test-first"]
      - id: requirements-txt-fixer
      - id: trailing-whitespace

  - repo: https://github.com/pre-commit/pygrep-hooks
    rev: "v1.10.0"
    hooks:
      - id: rst-backticks
      - id: rst-directive-colons
      - id: rst-inline-touching-normal

  - repo: https://github.com/rbubley/mirrors-prettier
    rev: "v3.8.2"
    hooks:
      - id: prettier
        types_or: [yaml, markdown, html, css, scss, javascript, json]
        args: [--prose-wrap=always]

  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: "v0.15.10"
    hooks:
      # Run the linter
      - id: ruff-check
        args: ["--fix", "--show-fixes"]
      # Run the formatter.
      - id: ruff-format

  #- repo: https://github.com/pre-commit/mirrors-mypy
  #  rev: "v1.8.0"
  #  hooks:
  #    - id: mypy
  #      files: idc_index|tests
  #      args: []
  #      additional_dependencies:
  #        - pandas-stubs
  #        - pytest

  - repo: https://github.com/codespell-project/codespell
    rev: "v2.4.2"
    hooks:
      - id: codespell
        args: ["--quiet-level 3"]

  - repo: https://github.com/shellcheck-py/shellcheck-py
    rev: "v0.11.0.1"
    hooks:
      - id: shellcheck

  - repo: local
    hooks:
      - id: disallow-caps
        name: Disallow improper capitalization
        language: pygrep
        entry: PyBind|Numpy|Cmake|CCache|Github|PyTest
        exclude: .pre-commit-config.yaml

  - repo: https://github.com/henryiii/validate-pyproject-schema-store
    rev: "2026.04.11"
    hooks:
      - id: validate-pyproject

  - repo: https://github.com/python-jsonschema/check-jsonschema
    rev: "0.37.1"
    hooks:
      - id: check-dependabot
      - id: check-github-workflows
      - id: check-readthedocs