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# Hapdup
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HapDup (haplotype duplicator) is a pipeline to convert a haploid long read assembly into a diploid assembly.
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HapDup works with either Oxford Nanopore or PacBio (HiFi or CLR). The reconstructed haplotypes preserve heterozygous
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HapDup works with either Oxford Nanopore or PacBio HiFi. The reconstructed haplotypes preserve heterozygous
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structural variants (in addition to small variants) and are locally phased.
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