apply isort changes

jamesobutler · jamesobutler · commit c741d57b7f8d · 2024-10-23T16:48:45.000-04:00
Changes were automatically applied by running:
python -m isort .

Signed-off-by: James Butler &lt;james.butler@revvity.com&gt;
diff --git a/monai/__init__.py b/monai/__init__.py
@@ -11,12 +11,12 @@
 
 from __future__ import annotations
 
+import logging
 import os
 import sys
-import logging
 import warnings
-from ._version import get_versions
 
+from ._version import get_versions
 
 old_showwarning = warnings.showwarning
 
diff --git a/monai/apps/detection/transforms/array.py b/monai/apps/detection/transforms/array.py
@@ -15,9 +15,8 @@
 
 from __future__ import annotations
 
-from typing import Any
-
 from collections.abc import Sequence
+from typing import Any
 
 import numpy as np
 import torch
diff --git a/monai/apps/detection/utils/anchor_utils.py b/monai/apps/detection/utils/anchor_utils.py
@@ -39,7 +39,6 @@
 
 from __future__ import annotations
 
-
 from collections.abc import Sequence
 
 import torch
diff --git a/monai/apps/pathology/engines/utils.py b/monai/apps/pathology/engines/utils.py
@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any
-
 from collections.abc import Sequence
+from typing import Any
 
 import torch
 
diff --git a/monai/apps/pathology/inferers/inferer.py b/monai/apps/pathology/inferers/inferer.py
@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any, Callable
-
 from collections.abc import Sequence
+from typing import Any, Callable
 
 import numpy as np
 import torch
diff --git a/monai/apps/pathology/metrics/lesion_froc.py b/monai/apps/pathology/metrics/lesion_froc.py
@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import TYPE_CHECKING, Any
-
 from collections.abc import Iterable
+from typing import TYPE_CHECKING, Any
 
 import numpy as np
 
diff --git a/monai/apps/pathology/transforms/post/array.py b/monai/apps/pathology/transforms/post/array.py
@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import Callable
-
 from collections.abc import Sequence
+from typing import Callable
 
 import numpy as np
 import torch
diff --git a/monai/bundle/reference_resolver.py b/monai/bundle/reference_resolver.py
@@ -13,11 +13,9 @@
 
 import re
 import warnings
-from collections.abc import Sequence
+from collections.abc import Iterator, Sequence
 from typing import Any
 
-from collections.abc import Iterator
-
 from monai.bundle.config_item import ConfigComponent, ConfigExpression, ConfigItem
 from monai.bundle.utils import DEPRECATED_ID_MAPPING, ID_REF_KEY, ID_SEP_KEY
 from monai.utils import allow_missing_reference, look_up_option
diff --git a/monai/bundle/workflows.py b/monai/bundle/workflows.py
@@ -16,13 +16,12 @@
 import sys
 import time
 from abc import ABC, abstractmethod
+from collections.abc import Sequence
 from copy import copy
 from logging.config import fileConfig
 from pathlib import Path
 from typing import Any
 
-from collections.abc import Sequence
-
 from monai.apps.utils import get_logger
 from monai.bundle.config_parser import ConfigParser
 from monai.bundle.properties import InferProperties, MetaProperties, TrainProperties
diff --git a/monai/config/type_definitions.py b/monai/config/type_definitions.py
@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import os
-from typing import TypeVar, Union
-
 from collections.abc import Collection, Hashable, Iterable, Sequence
+from typing import TypeVar, Union
 
 import numpy as np
 import torch
diff --git a/monai/data/meta_obj.py b/monai/data/meta_obj.py
@@ -13,11 +13,10 @@
 
 import itertools
 import pprint
+from collections.abc import Iterable
 from copy import deepcopy
 from typing import Any
 
-from collections.abc import Iterable
-
 import numpy as np
 import torch
 
diff --git a/monai/data/meta_tensor.py b/monai/data/meta_tensor.py
@@ -13,11 +13,10 @@
 
 import functools
 import warnings
+from collections.abc import Sequence
 from copy import deepcopy
 from typing import Any
 
-from collections.abc import Sequence
-
 import numpy as np
 import torch
 
diff --git a/monai/engines/evaluator.py b/monai/engines/evaluator.py
@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import TYPE_CHECKING, Any, Callable
-
 from collections.abc import Iterable, Sequence
+from typing import TYPE_CHECKING, Any, Callable
 
 import torch
 from torch.utils.data import DataLoader
diff --git a/monai/engines/trainer.py b/monai/engines/trainer.py
@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import TYPE_CHECKING, Any, Callable
-
 from collections.abc import Iterable, Sequence
+from typing import TYPE_CHECKING, Any, Callable
 
 import torch
 from torch.optim.optimizer import Optimizer
diff --git a/monai/engines/utils.py b/monai/engines/utils.py
@@ -12,11 +12,9 @@
 from __future__ import annotations
 
 from abc import ABC, abstractmethod
-from collections.abc import Callable, Sequence
+from collections.abc import Callable, Mapping, Sequence
 from typing import TYPE_CHECKING, Any, cast
 
-from collections.abc import Mapping
-
 import torch
 import torch.nn as nn
 
diff --git a/monai/handlers/clearml_handlers.py b/monai/handlers/clearml_handlers.py
@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import TYPE_CHECKING, Any
-
 from collections.abc import Mapping, Sequence
+from typing import TYPE_CHECKING, Any
 
 from monai.utils import optional_import
 
diff --git a/monai/inferers/utils.py b/monai/inferers/utils.py
@@ -12,11 +12,9 @@
 from __future__ import annotations
 
 import itertools
-from collections.abc import Callable, Mapping, Sequence
+from collections.abc import Callable, Iterable, Mapping, Sequence
 from typing import Any
 
-from collections.abc import Iterable
-
 import numpy as np
 import torch
 import torch.nn.functional as F
diff --git a/monai/metrics/utils.py b/monai/metrics/utils.py
@@ -12,12 +12,11 @@
 from __future__ import annotations
 
 import warnings
+from collections.abc import Iterable, Sequence
 from functools import lru_cache, partial
 from types import ModuleType
 from typing import Any
 
-from collections.abc import Iterable, Sequence
-
 import numpy as np
 import torch
 
diff --git a/monai/networks/blocks/attention_utils.py b/monai/networks/blocks/attention_utils.py
@@ -9,7 +9,6 @@
 
 from __future__ import annotations
 
-
 import torch
 import torch.nn.functional as F
 from torch import nn
diff --git a/monai/networks/blocks/rel_pos_embedding.py b/monai/networks/blocks/rel_pos_embedding.py
@@ -9,7 +9,6 @@
 
 from __future__ import annotations
 
-
 from collections.abc import Iterable
 
 import torch
diff --git a/monai/networks/layers/simplelayers.py b/monai/networks/layers/simplelayers.py
@@ -12,8 +12,8 @@
 from __future__ import annotations
 
 import math
-from copy import deepcopy
 from collections.abc import Sequence
+from copy import deepcopy
 
 import torch
 import torch.nn.functional as F
diff --git a/monai/networks/layers/vector_quantizer.py b/monai/networks/layers/vector_quantizer.py
@@ -11,7 +11,6 @@
 
 from __future__ import annotations
 
-
 from collections.abc import Sequence
 
 import torch
diff --git a/monai/networks/nets/dynunet.py b/monai/networks/nets/dynunet.py
@@ -11,9 +11,8 @@
 
 # isort: dont-add-import: from __future__ import annotations
 
-from typing import Optional, Union
-
 from collections.abc import Sequence
+from typing import Optional, Union
 
 import torch
 import torch.nn as nn
diff --git a/monai/networks/nets/quicknat.py b/monai/networks/nets/quicknat.py
@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Optional, Union
-
 from collections.abc import Sequence
+from typing import Optional, Union
 
 import torch
 import torch.nn as nn
diff --git a/monai/networks/nets/swin_unetr.py b/monai/networks/nets/swin_unetr.py
@@ -13,14 +13,14 @@
 
 import itertools
 from collections.abc import Sequence
+from typing import Final
 
 import numpy as np
 import torch
 import torch.nn as nn
 import torch.nn.functional as F
 import torch.utils.checkpoint as checkpoint
 from torch.nn import LayerNorm
-from typing import Final
 
 from monai.networks.blocks import MLPBlock as Mlp
 from monai.networks.blocks import PatchEmbed, UnetOutBlock, UnetrBasicBlock, UnetrUpBlock
diff --git a/monai/networks/nets/vista3d.py b/monai/networks/nets/vista3d.py
@@ -12,9 +12,8 @@
 from __future__ import annotations
 
 import math
-from typing import Any, Callable, Optional
-
 from collections.abc import Sequence
+from typing import Any, Callable, Optional
 
 import numpy as np
 import torch
diff --git a/monai/transforms/intensity/dictionary.py b/monai/transforms/intensity/dictionary.py
@@ -17,9 +17,8 @@
 
 from __future__ import annotations
 
-from typing import Callable
-
 from collections.abc import Hashable, Mapping, Sequence
+from typing import Callable
 
 import numpy as np
 
diff --git a/monai/transforms/lazy/functional.py b/monai/transforms/lazy/functional.py
@@ -11,9 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any
-
 from collections.abc import Mapping, Sequence
+from typing import Any
 
 import torch
 
diff --git a/monai/transforms/spatial/array.py b/monai/transforms/spatial/array.py
@@ -15,13 +15,11 @@
 from __future__ import annotations
 
 import warnings
-from collections.abc import Callable
+from collections.abc import Callable, Sequence
 from copy import deepcopy
 from itertools import zip_longest
 from typing import Any, Optional, Union, cast
 
-from collections.abc import Sequence
-
 import numpy as np
 import torch
 
diff --git a/monai/transforms/utility/dictionary.py b/monai/transforms/utility/dictionary.py
@@ -18,12 +18,10 @@
 from __future__ import annotations
 
 import re
-from collections.abc import Callable, Hashable, Mapping
+from collections.abc import Callable, Hashable, Mapping, Sequence
 from copy import deepcopy
 from typing import Any, cast
 
-from collections.abc import Sequence
-
 import numpy as np
 import torch
 
diff --git a/monai/utils/component_store.py b/monai/utils/component_store.py
@@ -12,12 +12,11 @@
 from __future__ import annotations
 
 from collections import namedtuple
+from collections.abc import Iterable
 from keyword import iskeyword
 from textwrap import dedent, indent
 from typing import Any, Callable, TypeVar
 
-from collections.abc import Iterable
-
 T = TypeVar("T")
 
 
diff --git a/monai/utils/decorators.py b/monai/utils/decorators.py
@@ -15,9 +15,8 @@
 
 __all__ = ["RestartGenerator", "MethodReplacer"]
 
-from typing import Callable
-
 from collections.abc import Generator
+from typing import Callable
 
 
 class RestartGenerator:
diff --git a/monai/utils/dist.py b/monai/utils/dist.py
@@ -14,10 +14,7 @@
 import warnings
 from collections.abc import Callable
 from logging import Filter
-
-from typing import Literal
-
-from typing import overload
+from typing import Literal, overload
 
 import torch
 import torch.distributed as dist
diff --git a/monai/utils/module.py b/monai/utils/module.py
diff --git a/monai/utils/state_cacher.py b/monai/utils/state_cacher.py
diff --git a/tests/test_dynunet.py b/tests/test_dynunet.py
diff --git a/tests/test_network_consistency.py b/tests/test_network_consistency.py
