arnaq/DESCRIPTION at main · Queex/arnaq · GitHub

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Package: arnaq
Title: Experiment-Aware Quality Control for RNA Sequencing
Version: 1.0.0
Authors@R: c(
    person("Ben J", "Wright", email = "chthonic.games@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9279-4594")),
    person("Helen", "Lockstone", role=c("ctb")),
    person("Eshita", "Sharma", role=c("ctb")),
    person("Santiago", "Revale", role=c("ctb")),
    person("Matthieu", "Miossec", role=c("ctb")),
    person("Duncan", "Parkes", role=c("ctb")))
URL: https://www.github.com/queex/arnaq
BugReports: https://github.com/Queex/arnaq/issues
Description: Performs secondary quality control assessment of an RNA data set, incorporating
    information about the experimental design, to enable an analyst to identify potential data
    quality issues such as sample swaps, batch effects and failed samples. Produces an html report
    and (optionally) print-quality svg versions of the plots therein.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports:
    reshape2,
    ggplot2,
    dendextend,
    rmarkdown,
    svglite,
    DESeq2,
    vsn,
    rtracklayer,
    scales,
    hexbin,
    tinytex,
    SummarizedExperiment,
    utils,
    stats
SystemRequirements: pandoc
Suggests:
    knitr,
    R.utils
VignetteBuilder:
    knitr,
    R.rsp
biocViews:
    GeneExpressionWorkflow