using TAD coordinates with scenic wrapper function?

[sid5427]

Hi Seppe,

As the title suggests - is there a direct way to use the "run_scenic" wrapper function with TAD coordinates?
As opposed to following the second "step by step" tutorial and using the "get_search_space" function to incorporate the coordinates and then eventually go on to run the scenic function.

This would be useful as I can quickly drop in a pyranges object with TAD coordinates into my previous scenic code (which is based on the first tutorial).

Thanks
Sid

[SeppeDeWinter]

Hi @sid5427

You can add the TAD coordinates (you previously generated) to this field in the scenicplus object

scplus_obj.uns['search_space'] = <TAD>

After this you can just run the wrapper function, it won't overwrite the custom search space you put in.

I hope this helps.

Best,

Seppe