DESCRIPTION

Package: proBAMr
Type: Package
Title: Generating SAM Files From Shotgun Proteomics Data
Version: 2.0.0
Date: 2017-04-27
Authors@R: c(person("Xiaojing", "Wang", email="xiaojing.wang@bcm.edu", role=c("aut", "cre")),
    person("Matt", "Chambers", email="matt.chambers42@gmail.com", role=c("aut", "cph")),
    person("Baylor College of Medicine", role="cph"),
    person("Vanderbilt University", role="cph"))
Description: The interpretation of proteomics data is significantly enhanced by genomic annotation. 
    Using proBAMr, peptide-spectrum-matches can be easily reannotated using user-specified gene annotation 
    schemes and assembled into both protein and gene identifications. Using the genome as a common reference, 
    proBAMr facilitates seamless proteomics and proteogenomics data integration. ProBAM files can be readily 
    visualized in genome browsers and thus bring proteomics data analysis to a general audience beyond the 
    proteomics community.
License: Artistic-2.0
Depends: R (>= 3.0.1)
Imports:
    GenomicRanges,
    Biostrings,
    GenomicFeatures,
    rtracklayer,
    IRanges,
    AnnotationDbi,
    AhoCorasickTrie,
    customProDB,
    data.table,
    fastmatch,
    RSQLite,
    stringr,
    stringi
Suggests:
    testthat,
    diffobj,
    covr
Remotes: chambm/customProDB
biocViews: Proteomics, MassSpectrometry, Software, Visualization
NeedsCompilation: no
Packaged: 2015-10-14 04:58:30 UTC; biocbuild
RoxygenNote: 6.0.1