update logging #205
Workflow file for this run
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| name: Python and Conda | |
| on: | |
| push: | |
| paths: | |
| - 'nc2pt/**' | |
| - '.github/**' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| name: Python ${{ matrix.python-version }} example on ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup conda | |
| uses: s-weigand/setup-conda@v1 | |
| with: | |
| update-conda: false | |
| python-version: ${{ matrix.python-version }} | |
| conda-channels: anaconda, conda-forge | |
| - run: conda --version | |
| - run: which python | |
| - name: Install | |
| run: | | |
| conda install -c conda-forge pip | |
| - name: Install reqs | |
| run: | | |
| pip install -r requirements.txt | |
| pip install -e . | |
| - name: Lint with flake8 | |
| run: | | |
| conda install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 nc2pt --max-line-length=127 --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 nc2pt --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| conda install pytest | |
| pytest nc2pt/tests/ | |
| - name: Generate coverage reports | |
| run: | | |
| conda install pytest-cov | |
| pytest --cov-config=.coveragerc --cov=nc2pt --cov-report=xml nc2pt/tests/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| directory: ./ | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: false | |
| files: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella | |
| path_to_write_report: ./codecov_report.txt | |
| verbose: true | |
| # jobs: | |
| # build-linux: | |
| # runs-on: ubuntu-latest | |
| # strategy: | |
| # max-parallel: 5 | |
| # matrix: | |
| # python-version: ["3.7", "3.8", "3.9", "3.10"] | |
| # steps: | |
| # - uses: actions/checkout@v3 | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Add conda to system path | |
| # run: | | |
| # # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| # echo $CONDA/bin >> $GITHUB_PATH | |
| # - name: Install dependencies | |
| # run: | | |
| # conda install -c conda-forge mamba | |
| # mamba env create -f environment.yml | |
| # mamba activate nc2pt_env | |
| # mamba install pip | |
| # pip install -e . | |
| # - name: Lint with flake8 | |
| # run: | | |
| # conda install flake8 | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 nc2pt --max-line-length=127 --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 nc2pt --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| # - name: Test with pytest | |
| # run: | | |
| # conda install pytest | |
| # pytest nc2pt/tests/test_align.py | |
| # - name: Generate coverage reports | |
| # run: | | |
| # conda install pytest-cov | |
| # pytest --cov-config=.coveragerc --cov=nc2pt --cov-report=xml nc2pt/tests/test_align.py | |
| # - name: Upload coverage to Codecov | |
| # uses: codecov/codecov-action@v3 | |
| # with: | |
| # directory: ./ | |
| # env_vars: OS,PYTHON | |
| # fail_ci_if_error: false | |
| # files: ./coverage.xml | |
| # flags: unittests | |
| # name: codecov-umbrella | |
| # path_to_write_report: ./codecov_report.txt | |
| # verbose: true |