ci: use dev versions of immundata and immunarch #16
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| name: ci | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| permissions: | |
| contents: write | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Configure Git Credentials | |
| run: | | |
| git config user.name github-actions[bot] | |
| git config user.email 41898282+github-actions[bot]@users.noreply.github.com | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| - run: pip install mkdocs-material mkquartodocs mkdocs-static-i18n | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Reset pak state | |
| run: | | |
| rm -rf ~/.cache/R/pak ~/.local/share/r-pak ~/.local/state/r-pak || true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::knitr | |
| any::reticulate | |
| any::rmarkdown | |
| github::immunomind/immundata@dev | |
| github::immunomind/immunarch@dev | |
| cache-version: ${{ github.run_number }} | |
| - name: Point reticulate at CI Python | |
| run: echo "RETICULATE_PYTHON=$(python -c 'import sys; print(sys.executable)')" >> $GITHUB_ENV | |
| - run: mkdocs gh-deploy --force --clean |