Merge pull request #462 from nextstrain/bdbv_update_jun3

bdbv: update tree

Author: rneher

data/nextstrain/orthoebolavirus/bdbv/CHANGELOG.md

@@ -1,6 +1,8 @@
 ## Unreleased
 
- - update tree with additional DRC genomes.
+ - Include open 2026 Outbreak sequences as examples;
+ - squash zero length branches
+ - change display defaults to show mutations relative to reference tree
 
 
 ## 2026-05-22T16:04:17Z

data/nextstrain/orthoebolavirus/bdbv/examples.fasta

@@ -12,8 +12,7 @@
   "attributes": {
     "name": "Bundibugyo ebolavirus",
     "reference accession": "NC_014373.1",
-    "reference name": "UGA/2007/Butalya-811250",
-    "experimental": true
+    "reference name": "UGA/2007/Butalya-811250"
   },
   "compatibility": {
     "cli": "3.0.0-alpha.0",
@@ -28,7 +27,6 @@
     "readme": "README.md",
     "reference": "reference.fasta"
   },
-  "defaultCds": "GP",
   "qc": {
     "frameShifts": {
       "enabled": true,

data/nextstrain/orthoebolavirus/bdbv/pathogen.json

@@ -2330,8 +2330,7 @@
           "attributes": {
             "name": "Bundibugyo ebolavirus",
             "reference accession": "NC_014373.1",
-            "reference name": "UGA/2007/Butalya-811250",
-            "experimental": true
+            "reference name": "UGA/2007/Butalya-811250"
           },
           "files": {
             "treeJson": "tree.json",

data/nextstrain/orthoebolavirus/bdbv/tree.json

@@ -1,6 +1,8 @@
 ## Unreleased
 
- - update tree with additional DRC genomes.
+ - Include open 2026 Outbreak sequences as examples;
+ - squash zero length branches
+ - change display defaults to show mutations relative to reference tree
 
 
 ## 2026-05-22T16:04:17Z

data_output/index.json

@@ -12,8 +12,7 @@
   "attributes": {
     "name": "Bundibugyo ebolavirus",
     "reference accession": "NC_014373.1",
-    "reference name": "UGA/2007/Butalya-811250",
-    "experimental": true
+    "reference name": "UGA/2007/Butalya-811250"
   },
   "compatibility": {
     "cli": "3.0.0-alpha.0",
@@ -28,7 +27,6 @@
     "readme": "README.md",
     "reference": "reference.fasta"
   },
-  "defaultCds": "GP",
   "qc": {
     "frameShifts": {
       "enabled": true,