wc: fix cellbase v5 checks

Author: imedina

.github/workflows/release-github-workflow.yml

@@ -12,7 +12,7 @@ jobs:
     name: "Create GitHub Release"
     runs-on: ${{ vars.UBUNTU_VERSION }}
     steps:
-      - uses: actions/download-artifact@v4gi
+      - uses: actions/download-artifact@v4
         with:
           name: iva-app
           path: iva-${{ inputs.version }}.tar.gz

src/webcomponents/commons/filters/feature-filter.js

@@ -108,15 +108,10 @@ export default class FeatureFilter extends LitElement {
                     let restResponse;
                     if (this.cellbaseClient) {
                         if (params?.data?.term) {
-                            if (this.cellbaseClient.getConfig()?.version?.startsWith("v5")) {
-                                restResponse = await this.cellbaseClient.get("feature", "gene", params?.data?.term?.toUpperCase(), "startsWith", {
+                            restResponse = await this.cellbaseClient.get("feature", "gene", params?.data?.term?.toUpperCase(), "startsWith",
+                                {
                                     limit: this._config.limit,
                                 }, {});
-                            } else {
-                                restResponse = await this.cellbaseClient.get("feature", "id", params?.data?.term?.toUpperCase(), "starts_with", {
-                                    limit: this._config.limit,
-                                }, {});
-                            }
                         } else {
                             restResponse = await this.cellbaseClient.get("feature", "gene", "search", "", {limit: this._config.limit}, {});
                         }

src/webcomponents/commons/filters/ontology-autocomplete-filter.js

@@ -86,14 +86,7 @@ export default class OntologyAutocompleteFilter extends LitElement {
                         source: this._config.ontologyFilter
                     };
                     try {
-                        // FIXME to support old cellbase v4
-                        let fetchGoOntologies;
-                        if (this.cellbaseClient?._config?.version === "v4") {
-                            const cellbaseClient = new CellBaseClient({host: "https://ws.opencb.org/cellbase-5.0.0/", version: "v5"});
-                            fetchGoOntologies = await cellbaseClient.get("feature", "ontology", undefined, "search", query, {});
-                        } else {
-                            fetchGoOntologies = await this.cellbaseClient.get("feature", "ontology", undefined, "search", query, {});
-                        }
+                        const fetchGoOntologies = await this.cellbaseClient.get("feature", "ontology", undefined, "search", query, {});
                         const results = fetchGoOntologies.responses[0].results;
                         const data = results.map(ontology => ({name: ontology.name, id: ontology.id}));
                         success(data);

src/webcomponents/variant/interpretation/variant-interpreter-grid-config.js

@@ -337,7 +337,7 @@ export default class VariantInterpreterGridConfig extends LitElement {
                             text: "Select the Gene Set to be displayed",
                             display: {
                                 containerStyle: "margin: 5px 5px 5px 0px",
-                                visible: () => this.opencgaSession?.project?.cellbase?.version.startsWith("v5")
+                                // visible: () => this.opencgaSession?.project?.cellbase?.version.startsWith("v5")
                             }
                         },
                         {
@@ -346,7 +346,7 @@ export default class VariantInterpreterGridConfig extends LitElement {
                             text: "Ensembl",
                             display: {
                                 containerStyle: "margin: 10px 5px",
-                                visible: () => this.opencgaSession?.project?.cellbase?.version.startsWith("v5")
+                                // visible: () => this.opencgaSession?.project?.cellbase?.version.startsWith("v5")
                             }
                         },
                         {
@@ -355,7 +355,7 @@ export default class VariantInterpreterGridConfig extends LitElement {
                             text: "RefSeq",
                             display: {
                                 containerStyle: "margin: 10px 5px",
-                                visible: () => this.opencgaSession?.project?.cellbase?.version.startsWith("v5")
+                                // visible: () => this.opencgaSession?.project?.cellbase?.version.startsWith("v5")
                             }
                         },
                         {