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@tatami-inc tatami libraries and extensions

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    31 repositories

    • mattress

      Public
      Python interface to tatami representations
      matrixtatami
      matrixtatami
      Python
      •
      MIT License
      •0•0•1•0•Updated May 7, 2026May 7, 2026

    • beachmat.hdf5

      Public
      Beachmat extensions for HDF5 matrices
      R
      •0•0•1•0•Updated Apr 11, 2026Apr 11, 2026

    • beachmat

      Public
      Clone of the Bioconductor repository for the beachmat package.
      matrix-librarybioconductor-packagehuman-cell-atlas
      matrix-librarybioconductor-packagehuman-cell-atlas
      C++
      •5•5•6•0•Updated Apr 9, 2026Apr 9, 2026

    • tatami_hdf5

      Public
      tatami bindings for HDF5 matrices
      C++
      •
      MIT License
      •0•0•0•0•Updated Mar 29, 2026Mar 29, 2026

    • eminem

      Public
      C++ parsers for Matrix Market files
      C++
      •
      MIT License
      •0•1•1•0•Updated Mar 25, 2026Mar 25, 2026

    • tatami_mtx

      Public
      Matrix Market to tatami matrices
      C++
      •
      MIT License
      •0•0•1•0•Updated Mar 25, 2026Mar 25, 2026

    • tatami_stats

      Public
      Matrix statistics for tatami
      C++
      •
      MIT License
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • tatami

      Public
      C++ API for various matrix types.
      cpp
      cpp
      C++
      •
      MIT License
      •2•15•2•0•Updated Feb 27, 2026Feb 27, 2026

    • developer-guide

      Public
      Developer guide for tatami libraries
      MIT License
      •0•1•0•0•Updated Feb 25, 2026Feb 25, 2026

    • tatami_r

      Public
      tatami bindings for abstract R matrices
      C++
      •
      MIT License
      •0•1•0•0•Updated Feb 25, 2026Feb 25, 2026

    • tatami_layered

      Public
      Create layered tatami matrices for sparse positive counts
      C++
      •
      MIT License
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • tatami_python

      Public
      tatami bindings for abstract Python matrices
      C++
      •
      MIT License
      •0•1•0•0•Updated Feb 24, 2026Feb 24, 2026

    • tatami_mult

      Public
      Matrix multiplication for tatami
      C++
      •
      MIT License
      •0•0•0•0•Updated Feb 24, 2026Feb 24, 2026

    • test-divmult

      Public
      Replacing division with reciprocal multiplication
      performance-testing
      performance-testing
      C++
      •
      MIT License
      •0•0•0•0•Updated Jan 21, 2026Jan 21, 2026

    • eztimer

      Public
      Easy timing of C++ functions
      performance-testing
      performance-testing
      C++
      •
      MIT License
      •0•0•0•0•Updated Jan 14, 2026Jan 14, 2026

    • tatami_test

      Public
      Test utilities for tatami libraries
      C++
      •
      MIT License
      •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • tatami_chunked

      Public
      Developer utilities for creating chunked matrix representations
      C++
      •
      MIT License
      •0•0•1•0•Updated Nov 12, 2025Nov 12, 2025

    • test-extractor_reallocation

      Public
      Performance implications of Extractor and buffer reallocations
      performance-testing
      performance-testing
      C++
      •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • beachmat.tiledb

      Public
      Beachmat extensions for TileDB matrices
      R
      •1•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • tatami_tiledb

      Public
      tatami bindings for TileDB-backed matrices
      C++
      •
      MIT License
      •0•0•0•0•Updated Jul 13, 2025Jul 13, 2025

    • manticore

      Public
      C++ library for main thread execution
      C++
      •
      MIT License
      •0•1•0•0•Updated Jul 8, 2025Jul 8, 2025

    • test-false_sharing

      Public
      Check performance implications of false sharing
      performance-testing
      performance-testing
      C++
      •0•0•0•0•Updated Jan 12, 2025Jan 12, 2025

    • .github

      Public
      Miscellaneous organization meta-details
      MIT License
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • gallery

      Public
      Gallery of tatami usage examples
      C++
      •
      MIT License
      •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • test-blocked_running_stats

      Public
      Performance testing of blocked calculations of running statistics
      performance-testing
      performance-testing
      C++
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • test-simple_simd_perf

      Public
      SIMD performance testing for delayed operations
      performance-testing
      performance-testing
      C++
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • test-summation_speed

      Public
      Performance testing of summation strategies
      performance-testing
      performance-testing
      C++
      •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • test-isometric_unary_sparse_expansion

      Public
      Performance testing of sparse expansion for isometric unary operations.
      performance-testing
      performance-testing
      C++
      •0•0•0•0•Updated Mar 24, 2024Mar 24, 2024

    • test-sparse_priority_queue

      Public
      Performance testing of a priority queue for sparse secondary extraction.
      performance-testing
      performance-testing
      C++
      •0•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • test-sparse_indexed_extraction

      Public
      Performance tests for sparse indexed extraction.
      performance-testing
      performance-testing
      C++
      •0•0•0•0•Updated Mar 21, 2024Mar 21, 2024
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