diff --git a/posterior_database/posteriors/M0_data-M0_model.json b/posterior_database/posteriors/M0_data-M0_model.json index d6c37fdf..8a71a405 100644 --- a/posterior_database/posteriors/M0_data-M0_model.json +++ b/posterior_database/posteriors/M0_data-M0_model.json @@ -1,5 +1,8 @@ { - "keywords": ["bpa book", "capture-recapture"], + "keywords": [ + "bpa book", + "capture-recapture" + ], "urls": "https://github.com/stan-dev/example-models/blob/master/BPA/Ch.06", "references": "kery2011population", "dimensions": { @@ -8,7 +11,7 @@ "omega_nd": 1, "N": 1 }, - "reference_posterior_name": null, + "reference_posterior_name": "M0_data-M0_model", "added_date": "2021-06-24", "added_by": "Kane Lindsay", "name": "M0_data-M0_model", diff --git a/posterior_database/posteriors/Rate_4_data-Rate_4_model.json b/posterior_database/posteriors/Rate_4_data-Rate_4_model.json index e2f62ce4..f08f8bc1 100644 --- a/posterior_database/posteriors/Rate_4_data-Rate_4_model.json +++ b/posterior_database/posteriors/Rate_4_data-Rate_4_model.json @@ -1,5 +1,7 @@ { - "keywords": ["binomial"], + "keywords": [ + "binomial" + ], "urls": "https://github.com/stan-dev/example-models/tree/master/Bayesian_Cognitive_Modeling/ParameterEstimation/Binomial", "references": "lee2013cognitive", "dimensions": { @@ -8,7 +10,7 @@ "postpredk": 1, "priorpredk": 1 }, - "reference_posterior_name": null, + "reference_posterior_name": "Rate_4_data-Rate_4_model", "added_date": "2021-06-30", "added_by": "Kane Lindsay", "name": "Rate_4_data-Rate_4_model", diff --git a/posterior_database/posteriors/sesame_data-sesame_one_pred_a.json b/posterior_database/posteriors/sesame_data-sesame_one_pred_a.json index 46817fa1..d6cb1fa2 100644 --- a/posterior_database/posteriors/sesame_data-sesame_one_pred_a.json +++ b/posterior_database/posteriors/sesame_data-sesame_one_pred_a.json @@ -1,12 +1,14 @@ { - "keywords": ["arm book"], + "keywords": [ + "arm book" + ], "urls": "https://github.com/stan-dev/example-models/tree/master/ARM/Ch.10", "references": "gelman2006data", "dimensions": { "beta": 2, "sigma": 1 }, - "reference_posterior_name": null, + "reference_posterior_name": "sesame_data-sesame_one_pred_a", "added_date": "2020-10-23", "added_by": "Phil Clemson", "name": "sesame_data-sesame_one_pred_a", diff --git a/posterior_database/posteriors/wells_data-wells_dist100ars_model.json b/posterior_database/posteriors/wells_data-wells_dist100ars_model.json index f1384a2c..10248641 100644 --- a/posterior_database/posteriors/wells_data-wells_dist100ars_model.json +++ b/posterior_database/posteriors/wells_data-wells_dist100ars_model.json @@ -1,12 +1,15 @@ { - "keywords": ["arm book", "logistic regression"], + "keywords": [ + "arm book", + "logistic regression" + ], "urls": "https://github.com/stan-dev/example-models/tree/master/ARM/Ch.5", "references": "gelman2006data", "dimensions": { "alpha": 1, "beta": 2 }, - "reference_posterior_name": null, + "reference_posterior_name": "wells_data-wells_dist100ars_model", "added_date": "2021-07-07", "added_by": "Kane Lindsay", "name": "wells_data-wells_dist100ars_model", diff --git a/posterior_database/posteriors/wells_data-wells_interaction_c_model.json b/posterior_database/posteriors/wells_data-wells_interaction_c_model.json index d988099a..1ed22f8a 100644 --- a/posterior_database/posteriors/wells_data-wells_interaction_c_model.json +++ b/posterior_database/posteriors/wells_data-wells_interaction_c_model.json @@ -1,12 +1,16 @@ { - "keywords": ["arm book", "logistic regression", "interaction"], + "keywords": [ + "arm book", + "logistic regression", + "interaction" + ], "urls": "https://github.com/stan-dev/example-models/tree/master/ARM/Ch.5", "references": "gelman2006data", "dimensions": { "alpha": 1, "beta": 2 }, - "reference_posterior_name": null, + "reference_posterior_name": "wells_data-wells_interaction_c_model", "added_date": "2021-07-07", "added_by": "Kane Lindsay", "name": "wells_data-wells_interaction_c_model", diff --git a/posterior_database/reference_posteriors/draws/draws/M0_data-M0_model.json.zip b/posterior_database/reference_posteriors/draws/draws/M0_data-M0_model.json.zip new file mode 100644 index 00000000..718774af Binary files /dev/null and b/posterior_database/reference_posteriors/draws/draws/M0_data-M0_model.json.zip differ diff --git a/posterior_database/reference_posteriors/draws/draws/Rate_4_data-Rate_4_model.json.zip b/posterior_database/reference_posteriors/draws/draws/Rate_4_data-Rate_4_model.json.zip new file mode 100644 index 00000000..542785ae Binary files /dev/null and b/posterior_database/reference_posteriors/draws/draws/Rate_4_data-Rate_4_model.json.zip differ diff --git a/posterior_database/reference_posteriors/draws/draws/sesame_data-sesame_one_pred_a.json.zip b/posterior_database/reference_posteriors/draws/draws/sesame_data-sesame_one_pred_a.json.zip new file mode 100644 index 00000000..8e71e160 Binary files /dev/null and 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b/posterior_database/reference_posteriors/draws/info/M0_data-M0_model.info.json new file mode 100644 index 00000000..004a90a3 --- /dev/null +++ b/posterior_database/reference_posteriors/draws/info/M0_data-M0_model.info.json @@ -0,0 +1,45 @@ +{ + "name": "M0_data-M0_model", + "inference": { + "method": "stan_sampling", + "method_arguments": { + "chains": 10, + "iter": 20000, + "warmup": 10000, + "thin": 10, + "seed": 2544, + "control": { + "adapt_delta": 0.8 + } + } + }, + "diagnostics": { + "diagnostics_information": { + "names": ["omega", "p"] + }, + "ndraws": 10000, + "nchains": 10, + "effective_sample_size_bulk": [10397.752683314129, 10352.194557760682], + "effective_sample_size_tail": [9907.0033458570178, 9994.1447976762302], + "r_hat": [1.00035855056529, 0.999736211359173], + "divergent_transitions": [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], + "expected_fraction_of_missing_information": [2.00731683845137, 2.0494332569305, 2.07954956469819, 2.01438473886658, 1.97020108057719, 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a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_1_data-Rate_1_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_1_data-Rate_1_model.json index 1e7e8189..ccac718f 100644 --- a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_1_data-Rate_1_model.json +++ b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_1_data-Rate_1_model.json @@ -1,5 +1,5 @@ { "names": "theta", - "mean_value": 0.26994058370029783, + "mean_squared_value": 0.26994058370029783, "mcse_mean": 0.0014213989354137165 } diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_3_data-Rate_3_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_3_data-Rate_3_model.json index 001b5bec..fd50cd4c 100644 --- a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_3_data-Rate_3_model.json +++ b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_3_data-Rate_3_model.json @@ -1,5 +1,5 @@ { "names": "theta", - "mean_value": 0.35958533268368248, + "mean_squared_value": 0.35958533268368248, "mcse_mean": 0.0011959179846367462 } diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_4_data-Rate_4_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_4_data-Rate_4_model.json new file mode 100644 index 00000000..7daf06ce --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/Rate_4_data-Rate_4_model.json @@ -0,0 +1,5 @@ +{ + "names": ["theta", "thetaprior"], + "mean_squared_value": [0.01963122905178764, 0.33326508048521652], + "mcse_mean": [0.00025102230333226203, 0.0029780456215864888] +} diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/dogs-dogs_hierarchical.json b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/dogs-dogs_hierarchical.json index b6154531..4d2a8571 100644 --- a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/dogs-dogs_hierarchical.json +++ b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/dogs-dogs_hierarchical.json @@ -1,5 +1,5 @@ { "names": ["a", "b"], - "mean_value": [0.8526705092531689, 0.61758873820514693], + "mean_squared_value": [0.8526705092531689, 0.61758873820514693], "mcse_mean": [0.00019825413286753786, 0.00029928644012964199] } diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/sesame_data-sesame_one_pred_a.json b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/sesame_data-sesame_one_pred_a.json new file mode 100644 index 00000000..e70906c5 --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/sesame_data-sesame_one_pred_a.json @@ -0,0 +1,5 @@ +{ + "names": ["beta[1]", "beta[2]", "sigma"], + "mean_squared_value": [0.29907396405286962, 0.13405153632931388, 0.14690431988731928], + "mcse_mean": [0.00044829992609203665, 0.00037273216672803689, 0.00014341426509320517] +} diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/wells_data-wells_dist100ars_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_squared_value/mean_squared_value/wells_data-wells_dist100ars_model.json new 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b/posterior_database/reference_posteriors/summary_statistics/mean_value/info/wells_data-wells_interaction_c_model.info.json new file mode 100644 index 00000000..d639127b --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/info/wells_data-wells_interaction_c_model.info.json @@ -0,0 +1,46 @@ +{ + "name": "wells_data-wells_interaction_c_model", + "inference": { + "method": "stan_sampling", + "method_arguments": { + "chains": 10, + "iter": 20000, + "warmup": 10000, + "thin": 10, + "seed": 2544, + "control": { + "adapt_delta": 0.8 + } + } + }, + "diagnostics": { + "diagnostics_information": { + "names": ["alpha", "beta[1]", "beta[2]", "beta[3]"] + }, + "ndraws": 10000, + "nchains": 10, + "effective_sample_size_bulk": [10244.255865772164, 9904.3232846493629, 10303.105142901522, 9997.6550624533065], + "effective_sample_size_tail": [9693.0322729964955, 9972.4367707919846, 9993.3704952286644, 9873.2769228601082], + "r_hat": [0.999986609192137, 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a/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/M0_data-M0_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/M0_data-M0_model.json new file mode 100644 index 00000000..538b0761 --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/M0_data-M0_model.json @@ -0,0 +1,5 @@ +{ + "names": ["omega", "p"], + "mean_value": [0.42384058238700001, 0.49642901163800002], + "mcse_mean": [0.0003765801116059401, 0.00037479499756586635] +} diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/Rate_4_data-Rate_4_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/Rate_4_data-Rate_4_model.json new file mode 100644 index 00000000..3712686f --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/Rate_4_data-Rate_4_model.json @@ -0,0 +1,5 @@ +{ + "names": 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b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_dist100ars_model.json new file mode 100644 index 00000000..b3dc83b5 --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_dist100ars_model.json @@ -0,0 +1,5 @@ +{ + "names": ["alpha", "beta[1]", "beta[2]"], + "mean_value": [0.0031888914225370203, -0.90004462184, 0.46164337178999998], + "mcse_mean": [0.00079526253129230012, 0.0010554877727038407, 0.00041284125601596494] +} diff --git a/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_interaction_c_model.json b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_interaction_c_model.json new file mode 100644 index 00000000..d53b278a --- /dev/null +++ b/posterior_database/reference_posteriors/summary_statistics/mean_value/mean_value/wells_data-wells_interaction_c_model.json @@ -0,0 +1,5 @@ +{ + "names": ["alpha", "beta[1]", "beta[2]", "beta[3]"], + "mean_value": [0.35207338497599999, -0.87730505821799998, 0.47035081646299998, -0.179868209142759], + "mcse_mean": [0.00039282827207914617, 0.001061889550673995, 0.0004187235858159503, 0.0010276124000535994] +}