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drop class and tidy method. This disruptive change is because the pac… #465

drop class and tidy method. This disruptive change is because the pac…

drop class and tidy method. This disruptive change is because the pac… #465

Triggered via pull request October 25, 2025 03:33
Status Failure
Total duration 30m 57s
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check-bioc.yml

on: pull_request
Matrix: build-check
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10 errors and 41 warnings
ubuntu-latest (4.3)
Process completed with exit code 1.
macOS-latest (4.3)
Process completed with exit code 1.
macOS-latest (4.3)
Failed to install 'tidySingleCellExperiment' from local:
macOS-latest (4.3)
Vignette re-building failed.
macOS-latest (4.3)
processing vignette 'introduction.Rmd' failed with diagnostics:
macOS-latest (4.3)
--- re-building ‘introduction.Rmd’ using rmarkdown
windows-latest (4.3)
Process completed with exit code 1.
windows-latest (4.3)
Failed to install 'tidySingleCellExperiment' from local:
windows-latest (4.3)
Vignette re-building failed.
windows-latest (4.3)
processing vignette 'introduction.Rmd' failed with diagnostics:
ubuntu-latest (4.3)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (4.3)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
‘t2’ may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (4.3)
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
macOS-latest (4.3)
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
macOS-latest (4.3)
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3:
macOS-latest (4.3)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (4.3)
harfbuzz 12.1.0 is already installed and up-to-date. To reinstall 12.1.0, run: brew reinstall harfbuzz
windows-latest (4.3)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
windows-latest (4.3)
this package has a non-empty 'configure.win' file,
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
windows-latest (4.3)
this package has a non-empty 'configure.win' file,
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
windows-latest (4.3)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3: