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Force abundance column to reduce dimensions #123

Force abundance column to reduce dimensions

Force abundance column to reduce dimensions #123

Triggered via pull request April 2, 2026 03:50
Status Success
Total duration 1h 33m 57s
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rworkflows.yml

on: pull_request
Matrix: rworkflows
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[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1775101828157,"y":0},{"x":1775101833133,"y":0},{"x":1775101838140,"y":0},{"x":1775101843128,"y":0},{"x":1775101848136,"y":0},{"x":1775101853130,"y":0},{"x":1775101858128,"y":0},{"x":1775101863132,"y":0},{"x":1775101868130,"y":0},{"x":1775101873128,"y":0},{"x":1775101878129,"y":0},{"x":1775101883129,"y":0},{"x":1775101888130,"y":0},{"x":1775101893129,"y":0},{"x":1775101898131,"y":0},{"x":1775101903129,"y":0},{"x":1775101908133,"y":0},{"x":1775101913128,"y":0},{"x":1775101918131,"y":0},{"x":1775101923130,"y":0},{"x":1775101928131,"y":0},{"x":1775101933130,"y":0},{"x":1775101938134,"y":0},{"x":1775101943140,"y":0},{"x":1775101948130,"y":0},{"x":1775101953137,"y":0},{"x":1775101958129,"y":0},{"x":1775101963140,"y":0},{"x":1775101968135,"y":0},{"x":1775101973131,"y":0},{"x":1775101978135,"y":0},{"x":1775101983129,"y":0},{"x":1775101988129,"y":0},{"x":1775101993128,"y":0},{"x":1775101998142,"y":0},{"x":1775102003130,"y":0},{"x":1775102008137,"y":0},{"x":1775102013143,"y":0},{"x":1775102018134,"y":0},{"x":1775102023140,"y":0},{"x":1775102028141,"y":0},{"x":1775102033132,"y":0},{"x":1775102038136,"y":0},{"x":1775102043141,"y":0},{"x":1775102048132,"y":0},{"x":1775102053143,"y":0},{"x":1775102058138,"y":0},{"x":1775102063128,"y":0},{"x":1775102068134,"y":0},{"x":1775102073142,"y":0},{"x":1775102078129,"y":0},{"x":1775102083134,"y":0},{"x":1775102088138,"y":0},{"x":1775102093128,"y":0},{"x":1775102098132,"y":0},{"x":1775102103128,"y":0},{"x":1775102108139,"y":0},{"x":1775102113127,"y":0},{"x":1775102118130,"y":0},{"x":1775102123127,"y":0},{"x":1775102128139,"y":0},{"x":1775102133131,"y":0},{"x":1775102138128,"y":0},{"x":1775102143128,"y":0},{"x":1775102148129,"y":0},{"x":1775102153138,"y":0},{"x":1775102158130,"y":0},{"x":1775102163136,"y":0},{"x":1775102168129,"y":0},{"x":1775102173130,"y":0},{"x":1775102178129,"y":0},{"x":1775102183140,"y":0},{"x":1775102188129,"y":0},{"x":1775102193137,"y":0},{"x":1775102198130,"y":0},{"x":1775102203128,"y":0},{"x":1775102208140,"y":0},{"x":1775102213132,"y":0},{"x":1775102218136,"y":0},{"x":1775102223143,"y":0},{"x":1775102228134,"y":0},{"x":1775102233141,"y":0},{"x":1775102238131,"y":0},{"x":1775102243137,"y":0},{"x":1775102248128,"y":0},{"x":1775102253135,"y":0},{"x":1775102258127,"y":0},{"x":1775102263137,"y":0},{"x":1775102268130,"y":0},{"x":1775102273138,"y":0},{"x":1775102278141,"y":0},{"x":1775102283130,"y":0},{"x":1775102288134,"y":0},{"x":1775102293127,"y":0},{"x":1775102298136,"y":0},{"x":1775102303141,"y":0},{"x":1775102308133,"y":0},{"x":1775102313137,"y":0},{"x":1775102318143,"y":0},{"x":1775102323134,"y":0},{"x":1775102328140,"y":0},{"x":1775102333130,"y":0},{"x":1775102338137,"y":0},{"x":1775102343129,"y":0},{"x":1775102348129,"y":0},{"x":1775102353140,"y":0},{"x":1775102358140,"y":0},{"x":1775102363129,"y":0},{"x":1775102368129,"y":0},{"x":1775102373129,"y":0},{"x":1775102378139,"y":0},{"x":1775102383135,"y":0},{"x":1775102388128,"y":0},{"x":1775102393127,"y":0},{"x":1775102398128,"y":0},{"x":1775102403142,"y":0},{"x":1775102408129,"y":0},{"x":1775102413129,"y":0},{"x":1775102418136,"y":0},{"x":1775102423129,"y":0},{"x":1775102428128,"y":0},{"x":1775102433129,"y":0},{"x":1775102438127,"y":0},{"x":1775102443131,"y":0},{"x":1775102448130,"y":0},{"x":1775102453129,"y":0},{"x":1775102458140,"y":0},{"x":1775102463129,"y":0},{"x":1775102468128,"y":0},{"x":1775102473128,"y":0},{"x":1775102478138,"y":0},{"x":1775102483130,"y":0},{"x":1775102488141,"y":0},{"x":1775102493129,"y":0},{"x":1775102498128,"y":0},{"x":1775102503130,"y":0},{"x":1775102508130,"y":0},{"x":1775102513131,"y":0},{"x":1775102518128,"y":0},{"x":1775102523129,"y":0},{"x":1775102528133,"y":0},{"x":1775102533129,"y":0},{"x":1775102538129,"y":0},{"x":1775102543129,"y":0},{"x":1775102548140,"y":0},{"x":1775102553128,"y":0},{"x":1775102558128,"y":0},{"x":1775102563128,"y":0},{"x":1775102568128,"y":0},{
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1775101828157,"y":3243.4140625},{"x":1775101833133,"y":3349.9375},{"x":1775101838140,"y":3301.46875},{"x":1775101843128,"y":3344.9453125},{"x":1775101848136,"y":3343.3984375},{"x":1775101853130,"y":3354.84375},{"x":1775101858128,"y":3306.70703125},{"x":1775101863132,"y":3319.2109375},{"x":1775101868130,"y":3300.62109375},{"x":1775101873128,"y":3464.01171875},{"x":1775101878129,"y":3345.625},{"x":1775101883129,"y":3422.703125},{"x":1775101888130,"y":3512.90234375},{"x":1775101893129,"y":3285.05859375},{"x":1775101898131,"y":3532},{"x":1775101903129,"y":3560.44140625},{"x":1775101908133,"y":3318.69140625},{"x":1775101913128,"y":3322.18359375},{"x":1775101918131,"y":3331.9453125},{"x":1775101923130,"y":3354.1171875},{"x":1775101928131,"y":3358.58203125},{"x":1775101933130,"y":3362.2421875},{"x":1775101938134,"y":3380.171875},{"x":1775101943140,"y":3390.19140625},{"x":1775101948130,"y":3397.4296875},{"x":1775101953137,"y":3411.95703125},{"x":1775101958129,"y":3392.3203125},{"x":1775101963140,"y":3405.5859375},{"x":1775101968135,"y":3445.86328125},{"x":1775101973131,"y":3438.71484375},{"x":1775101978135,"y":3458.234375},{"x":1775101983129,"y":3453.15234375},{"x":1775101988129,"y":3463.44921875},{"x":1775101993128,"y":3461.43359375},{"x":1775101998142,"y":3463.1796875},{"x":1775102003130,"y":3464.70703125},{"x":1775102008137,"y":3470.640625},{"x":1775102013143,"y":3467.4296875},{"x":1775102018134,"y":3464.96875},{"x":1775102023140,"y":3463.078125},{"x":1775102028141,"y":3467.0234375},{"x":1775102033132,"y":3465.36328125},{"x":1775102038136,"y":3453.5625},{"x":1775102043141,"y":3443.70703125},{"x":1775102048132,"y":3408.83984375},{"x":1775102053143,"y":3459.24609375},{"x":1775102058138,"y":3456.359375},{"x":1775102063128,"y":3442.92578125},{"x":1775102068134,"y":3432.89453125},{"x":1775102073142,"y":3430.12890625},{"x":1775102078129,"y":3441.85546875},{"x":1775102083134,"y":3436},{"x":1775102088138,"y":3440.078125},{"x":1775102093128,"y":3435.1875},{"x":1775102098132,"y":3428.30859375},{"x":1775102103128,"y":3435.4921875},{"x":1775102108139,"y":3432.3359375},{"x":1775102113127,"y":3425.72265625},{"x":1775102118130,"y":3401.42578125},{"x":1775102123127,"y":3405.24609375},{"x":1775102128139,"y":3443.39453125},{"x":1775102133131,"y":3453.375},{"x":1775102138128,"y":3446.63671875},{"x":1775102143128,"y":3450.83984375},{"x":1775102148129,"y":3457.09765625},{"x":1775102153138,"y":3444.01171875},{"x":1775102158130,"y":3440.35546875},{"x":1775102163136,"y":3438.23046875},{"x":1775102168129,"y":3427.41015625},{"x":1775102173130,"y":3422.65625},{"x":1775102178129,"y":3423.4375},{"x":1775102183140,"y":3413.44140625},{"x":1775102188129,"y":3417.81640625},{"x":1775102193137,"y":3413.6484375},{"x":1775102198130,"y":3425.8203125},{"x":1775102203128,"y":3420.36328125},{"x":1775102208140,"y":3418.0625},{"x":1775102213132,"y":3414.140625},{"x":1775102218136,"y":3420.3828125},{"x":1775102223143,"y":3418.97265625},{"x":1775102228134,"y":3406.94921875},{"x":1775102233141,"y":3412.93359375},{"x":1775102238131,"y":3407.72265625},{"x":1775102243137,"y":3413.12890625},{"x":1775102248128,"y":3404.2890625},{"x":1775102253135,"y":3347.76953125},{"x":1775102258127,"y":3372.17578125},{"x":1775102263137,"y":3394.9765625},{"x":1775102268130,"y":3394.6015625},{"x":1775102273138,"y":3391.44921875},{"x":1775102278141,"y":3370.03125},{"x":1775102283130,"y":3373.80859375},{"x":1775102288134,"y":3388.390625},{"x":1775102293127,"y":3391.42578125},{"x":1775102298136,"y":3397.06640625},{"x":1775102303141,"y":3403.94140625},{"x":1775102308133,"y":3404.890625},{"x":1775102313137,"y":3401.72265625},{"x":1775102318143,"y":3402.3359375},{"x":1775102323134,"y":3398.76953125},{"x":1775102328140,"y":3413.890625},{"x":1775102333130,"y":3415.3125},{"x":1775102338137,"y":3412.94140625},{"x":1775102343129,"y":3413.67578125},{"x":1775102348129,"y":3421.1
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1775101828157,"y":3.2230786277172756},{"x":1775101833133,"y":33.64687740940632},{"x":1775101838140,"y":29.353011329755518},{"x":1775101843128,"y":33.53634185303515},{"x":1775101848136,"y":27.90743573296492},{"x":1775101853130,"y":30.482022915843537},{"x":1775101858128,"y":13.470983261501454},{"x":1775101863132,"y":6.509022407297244},{"x":1775101868130,"y":11.51566469093988},{"x":1775101873128,"y":25.207879627796476},{"x":1775101878129,"y":24.614925966411608},{"x":1775101883129,"y":20.894635161242384},{"x":1775101888130,"y":26.111744583808438},{"x":1775101893129,"y":21.755191693290733},{"x":1775101898131,"y":22.533346410357},{"x":1775101903129,"y":23.138510808646917},{"x":1775101908133,"y":22.55126418475015},{"x":1775101913128,"y":7.54313559743424},{"x":1775101918131,"y":8.83651699330191},{"x":1775101923130,"y":6.93855139020616},{"x":1775101928131,"y":8.782917447480028},{"x":1775101933130,"y":7.636327385106171},{"x":1775101938134,"y":7.5037147102526},{"x":1775101943140,"y":8.28417034356254},{"x":1775101948130,"y":8.58026538960391},{"x":1775101953137,"y":8.33703978255498},{"x":1775101958129,"y":14.874845105328378},{"x":1775101963140,"y":17.687074829931973},{"x":1775101968135,"y":12.4806549847736},{"x":1775101973131,"y":19.90481384165386},{"x":1775101978135,"y":7.123043392114127},{"x":1775101983129,"y":5.032692688725976},{"x":1775101988129,"y":4.607857820378413},{"x":1775101993128,"y":6.047505466110118},{"x":1775101998142,"y":7.938642362667464},{"x":1775102003130,"y":8.429023955652346},{"x":1775102008137,"y":8.338275998418347},{"x":1775102013143,"y":8.109725685785536},{"x":1775102018134,"y":9.198842661877682},{"x":1775102023140,"y":7.995031055900621},{"x":1775102028141,"y":6.424608678422826},{"x":1775102033132,"y":9.515726410384422},{"x":1775102038136,"y":10.112471384492885},{"x":1775102043141,"y":9.590330410660327},{"x":1775102048132,"y":20.52008750994431},{"x":1775102053143,"y":12.369450081671038},{"x":1775102058138,"y":18.74471156239112},{"x":1775102063128,"y":12.377249389362445},{"x":1775102068134,"y":4.74013713604293},{"x":1775102073142,"y":7.134346142389038},{"x":1775102078129,"y":8.35873095178616},{"x":1775102083134,"y":9.58030106669325},{"x":1775102088138,"y":8.270230141054194},{"x":1775102093128,"y":7.3564024237568235},{"x":1775102098132,"y":8.315098468271334},{"x":1775102103128,"y":9.409713574097136},{"x":1775102108139,"y":10.495699298960872},{"x":1775102113127,"y":7.846842366981602},{"x":1775102118130,"y":8.936741595384921},{"x":1775102123127,"y":22.99467899945298},{"x":1775102128139,"y":8.761659059337171},{"x":1775102133131,"y":21.56901688182721},{"x":1775102138128,"y":9.110845295055821},{"x":1775102143128,"y":4.968944099378882},{"x":1775102148129,"y":4.585011686309612},{"x":1775102153138,"y":5.660283758309356},{"x":1775102158130,"y":7.736963266940246},{"x":1775102163136,"y":6.95936247092016},{"x":1775102168129,"y":9.803433689972628},{"x":1775102173130,"y":7.060225410853482},{"x":1775102178129,"y":8.569310600444775},{"x":1775102183140,"y":7.214140310808798},{"x":1775102188129,"y":7.500375018750938},{"x":1775102193137,"y":8.072683943997617},{"x":1775102198130,"y":7.476821852258},{"x":1775102203128,"y":7.158167588853995},{"x":1775102208140,"y":8.92706419740827},{"x":1775102213132,"y":7.66979213176564},{"x":1775102218136,"y":7.72223885064352},{"x":1775102223143,"y":7.289440993788821},{"x":1775102228134,"y":7.178514376996806},{"x":1775102233141,"y":8.315512010742527},{"x":1775102238131,"y":7.143566322478158},{"x":1775102243137,"y":6.748496745018138},{"x":1775102248128,"y":8.068119755722158},{"x":1775102253135,"y":14.076116390133425},{"x":1775102258127,"y":17.66522237163205},{"x":1775102263137,"y":12.076604962583694},{"x":1775102268130,"y":21.73913043478261},{"x":1775102273138,"y":7.022710257050162},{"x":1775102278141,"y":3.8784327357600437},{"x":1775102283130,"y":5.497447082734348},{"x":17
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
dependency ‘BiocVersion’ is not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 13.2.1 is already installed and up-to-date. To reinstall 13.2.1, run: brew reinstall harfbuzz
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
dependency 'BiocVersion' is not available