ci: [pre-commit.ci] pre-commit autoupdate#1184
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Important Review skippedBot user detected. To trigger a single review, invoke the You can disable this status message by setting the WalkthroughThe updates consist of version changes for pre-commit hooks in the Changes
Sequence Diagram(s)sequenceDiagram
participant User
participant PreCommitConfig
participant TestFiles
participant PyProject
participant Notebook
User->>PreCommitConfig: Update versions
User->>TestFiles: Modify decorators
User->>PyProject: Add Jupyter checks
User->>Notebook: Restructure code
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## develop #1184 +/- ##
========================================
Coverage 93.06% 93.06%
========================================
Files 209 209
Lines 32897 32906 +9
========================================
+ Hits 30614 30623 +9
Misses 2283 2283 ☔ View full report in Codecov by Sentry. |
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Actionable comments posted: 1
Review details
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Files selected for processing (28)
- .pre-commit-config.yaml (2 hunks)
- package/PartSegImage/tifffile_fixes.py (1 hunks)
- package/tests/conftest.py (16 hunks)
- package/tests/test_PartSeg/conftest.py (3 hunks)
- package/tests/test_PartSeg/roi_analysis/test_batch.py (1 hunks)
- package/tests/test_PartSeg/roi_analysis/test_export_batch.py (2 hunks)
- package/tests/test_PartSeg/roi_analysis/test_image_view.py (4 hunks)
- package/tests/test_PartSeg/roi_analysis/test_main_window.py (3 hunks)
- package/tests/test_PartSeg/roi_mask/test_batch.py (1 hunks)
- package/tests/test_PartSeg/roi_mask/test_main_window.py (2 hunks)
- package/tests/test_PartSeg/test_analysis.py (4 hunks)
- package/tests/test_PartSeg/test_base_widgets.py (2 hunks)
- package/tests/test_PartSeg/test_channel_control.py (4 hunks)
- package/tests/test_PartSeg/test_check_release.py (1 hunks)
- package/tests/test_PartSeg/test_common_backend.py (1 hunks)
- package/tests/test_PartSeg/test_common_gui.py (8 hunks)
- package/tests/test_PartSeg/test_main_windows.py (2 hunks)
- package/tests/test_PartSeg/test_napari_image_view.py (5 hunks)
- package/tests/test_PartSeg/test_napari_widgets.py (8 hunks)
- package/tests/test_PartSeg/test_roi_analysis_batch.py (1 hunks)
- package/tests/test_PartSeg/test_settings.py (1 hunks)
- package/tests/test_PartSeg/test_viewer.py (3 hunks)
- package/tests/test_PartSegCore/test_analysis_batch.py (13 hunks)
- package/tests/test_PartSegCore/test_io.py (1 hunks)
- package/tests/test_PartSegCore/test_measurements.py (2 hunks)
- package/tests/test_PartSegCore/test_napari_plugins.py (1 hunks)
- pyproject.toml (1 hunks)
- tutorials/tutorial_neuron_types/Neuron_types_example.ipynb (17 hunks)
Files skipped from review due to trivial changes (24)
- .pre-commit-config.yaml
- package/tests/conftest.py
- package/tests/test_PartSeg/conftest.py
- package/tests/test_PartSeg/roi_analysis/test_batch.py
- package/tests/test_PartSeg/roi_analysis/test_export_batch.py
- package/tests/test_PartSeg/roi_analysis/test_image_view.py
- package/tests/test_PartSeg/roi_analysis/test_main_window.py
- package/tests/test_PartSeg/roi_mask/test_batch.py
- package/tests/test_PartSeg/roi_mask/test_main_window.py
- package/tests/test_PartSeg/test_analysis.py
- package/tests/test_PartSeg/test_base_widgets.py
- package/tests/test_PartSeg/test_channel_control.py
- package/tests/test_PartSeg/test_common_backend.py
- package/tests/test_PartSeg/test_common_gui.py
- package/tests/test_PartSeg/test_main_windows.py
- package/tests/test_PartSeg/test_napari_image_view.py
- package/tests/test_PartSeg/test_napari_widgets.py
- package/tests/test_PartSeg/test_roi_analysis_batch.py
- package/tests/test_PartSeg/test_settings.py
- package/tests/test_PartSegCore/test_analysis_batch.py
- package/tests/test_PartSegCore/test_io.py
- package/tests/test_PartSegCore/test_measurements.py
- package/tests/test_PartSegCore/test_napari_plugins.py
- tutorials/tutorial_neuron_types/Neuron_types_example.ipynb
Additional context used
Ruff
package/PartSegImage/tifffile_fixes.py
22-22: Unused function argument:
self(ARG001)
Additional comments not posted (5)
package/tests/test_PartSeg/test_check_release.py (1)
16-16: Verify the decorator usage.The change in the decorator usage from
@pytest.mark.enablethread()to@pytest.mark.enablethreadmight affect how pytest interprets the decorator. Ensure that the decorator is used correctly without parameters.Verify the decorator usage in the pytest documentation or by running the tests.
package/tests/test_PartSeg/test_viewer.py (3)
22-23: Verify the decorator usage.The change in the decorator usage from
@pytest.mark.windows_ci_skip()to@pytest.mark.windows_ci_skipmight affect how pytest interprets the decorator. Ensure that the decorator is used correctly without parameters.Verify the decorator usage in the pytest documentation or by running the tests.
41-42: Verify the decorator usage.The change in the decorator usage from
@pytest.mark.windows_ci_skip()to@pytest.mark.windows_ci_skipmight affect how pytest interprets the decorator. Ensure that the decorator is used correctly without parameters.Verify the decorator usage in the pytest documentation or by running the tests.
66-67: Verify the decorator usage.The change in the decorator usage from
@pytest.mark.windows_ci_skip()to@pytest.mark.windows_ci_skipmight affect how pytest interprets the decorator. Ensure that the decorator is used correctly without parameters.Verify the decorator usage in the pytest documentation or by running the tests.
pyproject.toml (1)
346-346: LGTM!The addition of this entry enhances the project's static analysis capabilities by including Jupyter Notebook files in the scope of checks. This change helps maintain code quality and consistency across different file types within the project.
The code changes are approved.
| def _dummy_report_func(self): | ||
| """dummy function for report_func""" |
There was a problem hiding this comment.
Remove unused self parameter.
The self parameter is unused in the _dummy_report_func method. Removing it will clean up the code.
Apply this diff to remove the unused parameter:
-def _dummy_report_func(self):
+def _dummy_report_func():Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| def _dummy_report_func(self): | |
| """dummy function for report_func""" | |
| def _dummy_report_func(): | |
| """dummy function for report_func""" |
Tools
Ruff
22-22: Unused function argument:
self(ARG001)
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pre-tests are failing because of pydantic/pydantic#10239 |
updates: - [github.com/astral-sh/ruff-pre-commit: v0.5.7 → v0.6.3](astral-sh/ruff-pre-commit@v0.5.7...v0.6.3) - [github.com/pre-commit/mirrors-mypy: v1.11.1 → v1.11.2](pre-commit/mirrors-mypy@v1.11.1...v1.11.2)
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