BioinformaticaVeldnorm

HPC wiki

Description

Fieldnorm for Bioinformatics within Medical Laboratories

Which procedures need to be documented for the development of pipelines, workflows or tools.

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Installation

Node

First install Node Version Manager (NVM):

wget -qO- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.3/install.sh | bash

To verify if NVM has been installed, do:

nvm -v

This outputs 0.39.3 if the installation was sucesfull. If there is an error try to debug with the official documentation.

Next install the correct Node version via NVM:

nvm install 16.18.0

Pnpm

Install the correct version of pnpm via:

curl -fsSL https://get.pnpm.io/install.sh | env PNPM_VERSION=8.5.1 sh -

Now navigate to the project folder and run:

pnpm install

Start the development version

To start the development version first navigate to the project folder. Next run the pnpm command:

pnpm docs:dev

This starts a local development version that can be viewed in a browser via localhost:8080.