OHBMpractical

This repository provides Matlab code for OHBM hackathon practical session.

Data files

Please download file geneExpression.mat from cloudstor, create data folder in the root directory and place the geneExpression.mat file there.

Code

First, setup by adding required paths by running setupPaths() function. Then, the script visualise_geneExpression.m in the code directory will plot a set of histograms visualising regional gene expression for selected genes and pairwise correlations between them. Run the script from the root directory.

To run functions separately from the root directory:

    % add paths required for the project:
    setupPaths()
    % load data
    load('geneExpression.mat')

• plot_distributions({'ABCA2', 'CAPN2', 'CTDSPL'}, probeInformation, parcelExpression, true)

• plot_scatter({'ABCA2', 'CAPN2', 'CTDSPL'}, probeInformation, parcelExpression,true)