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* init mdmaptsd rmd * load data * filter new csv * response/remission * subgroup * depression * update fig 2 for mdmaptsd * fig 2 png * update xlim and fig 2 * adjust xlim of response and remission plots * response & remission supplementary figures * remission plot indesign * update script to edit xlim of response and remission plots * regressions * add dosing regressions * PRISMA figure * three-level * update PRISMA figure * update mpT and plot threelevel * fig 2 indesign update (without weights) * updates * depression * add col * more indesign figures * added medium vs. low dose comparison * SI_Fig_02 indesign * SI_Fig_02 indesign * add functional impairment secondary outcome * figure edits * figure updates * fig 3 updates * fig 3 updated * minor adjustments fig 2 and SI fig 2 fix cut-off write out 'placebo' * update fig 02 * fig 2 and SI fig 2 keep title case consistent * update figure 4 * reorder three-level forest plot * fixed figure 3 ordered dose * reorder script , new supp figs * init new page * formatting edits fig 3 italicize/greek letter for beta, italicize p, include first significant digit * add tables * fig 3 git * new mitchell 2023 times on fig 3 * update figs * refresh fig 3 * clean up * cleanup * clean up * clean up dir * update * cleanup * rename * knit * add mdma refs * add mdma to nav bar * rm unused rbc stuff * add docs * clean figs dir * separate r projects * use metapsydata for download * update renvlocks for each project - new gh setup script * delete old R proj * separate setup.R script and README for each proj. * fixed fig 4 response --------- Co-authored-by: B-Sevchik <78758419+B-Sevchik@users.noreply.github.com>
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| We identified 8,174 reports from our [searches](/docs/datasets/psilodep_search/). | ||
| Of these, 86 passed initial title and abstract screening, while 15 reports (801 participants) were included after full-text review, with 12 reports (694 participants) meeting inclusion criteria for our primary model. | ||
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This page links figures and tables from /analysis/mdmaptsd/paperfigs/ (e.g., Fig_01.png), but this commit adds those publication assets under analysis/mdmaptsd/paperfigs/final/ instead. As a result, the primary dataset page renders with broken images for core content, which removes key study-selection and results visuals for readers.
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| This walk-through has some code chunks hidden for clarity. Full source | ||
| code for this analysis is available | ||
| [here](https://github.com/pennlinc/sypres-docs/blob/main/analysis/mdmaptsd/mdma-metanalysis.Rmd). |
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The “Full source code” URL points to analysis/mdmaptsd/mdma-metanalysis.Rmd, but that file is not present in this commit (the committed analysis file is analysis/mdmaptsd/mdmaptsd-meta-analysis.Rmd). Users following this link will hit a 404 and cannot reach the reproducible analysis script from the guide.
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| ## Study selection | ||
| We identified 8,174 reports from our [searches](/docs/datasets/psilodep_search/). |
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The MDMA-for-PTSD landing page’s study-selection section links to /docs/datasets/psilodep_search/, which is a different dataset’s search protocol. This misroutes readers to the wrong methods page and makes the reported MDMAPTSD selection workflow non-reproducible from the page.
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Merge this right before mdmaptsd-code branch is merged to main.