does not create merged_nodups.txt

[cip25]

Are you sure this is a bug?
I’m not completely sure. The pipeline runs without errors, but the expected output file is missing. If this is not considered a bug, I can move the question to the forum.

Describe the bug
I am running Juicer in order to use 3D-DNA afterward. The run completes without showing any errors, but the file nondups.txt is not generated. Because of this, I cannot proceed to the next steps of the workflow.

To Reproduce
Steps to reproduce the behavior:

Run Juicer with my dataset

Use restriction enzyme parameter set to none

Wait for the pipeline to finish

Observe that no nondups.txt file is produced

Expected behavior
I expected Juicer to generate the nondups.txt file as part of the standard output, allowing me to continue with 3D-DNA.

Additional context
I am unsure whether this issue could be related to memory limitations on my system or to the use of none as the restriction enzyme parameter. Any guidance on how to debug this would be appreciated.