SampleCode

Just some sample R and Shell scripts of mine that are part of the WGSA2 pipeline or scientific publicaitons

Name		Name	Last commit message	Last commit date
Latest commit History 46 Commits
16Svis_pipeline		16Svis_pipeline
dada2_pipeline		dada2_pipeline
minION_pipeline		minION_pipeline
wgsa2plus_samples		wgsa2plus_samples
16S-Vis-Helminths_clean.Rmd		16S-Vis-Helminths_clean.Rmd
CSSstyles.css		CSSstyles.css
Diversity.R		Diversity.R
Libraries_n_Colors.R		Libraries_n_Colors.R
README.md		README.md
TableMerging_v1.Rmd		TableMerging_v1.Rmd
dataClean.R		dataClean.R
dataCleanFunctions.R		dataCleanFunctions.R
dataCorrectionFunctions.R		dataCorrectionFunctions.R
dataCorrections.R		dataCorrections.R
effectEval.R		effectEval.R
exe_ncbiDownload_genomes.sh		exe_ncbiDownload_genomes.sh
exe_rawStatsQC.sh		exe_rawStatsQC.sh
fixSpeciesFunctions.R		fixSpeciesFunctions.R
myDiffAbuFunctions.R		myDiffAbuFunctions.R
otherFunctions.R		otherFunctions.R

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