Fix/run cluster for main hotfix#900
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milesAraya merged 7 commits intomain-hotfixfrom Aug 7, 2025
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itutu-tienday
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I checked the test cases and compared the nwb file before and after the code modifications (there were no structural differences).
*Please note that conflicts are expected when porting main to develop-main, so please be careful when performing the merge.
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Fix/run cluster for main hotfix
milesAraya
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Aug 7, 2025
Fix/run cluster for main hotfix
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Content
Adding fixes to solve error in using run_cluster.py to run snakemake.yaml files, in particular with new nwb_template format
#895
#899
Some additional functions were taken from develop-main.
__align_input_info_content_keysandclass SmkConfigReader:Testcase
Tutorial 1
snakemake_no_template.yaml.txt
snakemake_error_sample.yaml.txt
snakemake_nwb_template_corrected.yaml.txt