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Tips/Qs for Getting Started with CAPTUS on HPC

Status: Open.

#44 In edgardomortiz/Captus;

· cebos opened on Jun 27, 2026

Captus clean hangs during adaptor trimming and reports "missing plus" for valid FASTQ files

Status: Open.

#43 In edgardomortiz/Captus;

· inayananjali-byte opened on Jun 24, 2026

Using paired-end and single-end reads

Status: Open.

#42 In edgardomortiz/Captus;

· veronicamb opened on Jun 16, 2026

Short algnments filter

Status: Open.

#41 In edgardomortiz/Captus;

· tallnuttrbgv opened on Jun 10, 2026

CAPTUS 1.6.5 clean up error

Status: Open.

#39 In edgardomortiz/Captus;

· neolycus23 opened on Apr 13, 2026

divide by 0 error during read cleaning step

Status: Open.

#38 In edgardomortiz/Captus;

· tuataratuatarae opened on Apr 6, 2026

Error cmd_info.json not created during Salmon depth estimation

Status: Open.

#36 In edgardomortiz/Captus;

· vincianem opened on Feb 10, 2026

number of raw reads that used in each assembly

Status: Open.

#34 In edgardomortiz/Captus;

· shdbie91 opened on Dec 16, 2025

Inconsistent extraction across different Captus versions

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In edgardomortiz/Captus;

· DavCP opened on Nov 6, 2025

AttributeError: module 'urllib' has no attribute 'parse'

Status: Open.

#32 In edgardomortiz/Captus;

· korjent opened on Oct 10, 2025

Error on extraction stats report

Status: Open.

#31 In edgardomortiz/Captus;

· rcarrmart opened on Oct 6, 2025

Read files for samples run across multiple lanes

Status: Open.

#30 In edgardomortiz/Captus;

· mellamosummer opened on Aug 11, 2025