Installation in Biolinux

[elopez115]

Hi im a newbie with installing software like this. I type make all and get this message. I try to run runHALC.py and it says "command not found". Please need help!

make all
g++ -std=c++11 -g -O0 -fopenmp src/HALC.o src/BlasrAdapter.o src/parsingargs.o -o HALC
g++ -std=c++11 -g -O0 thirdparty/Splitter.o -o Splitter
g++ -std=c++11 -g -O0 thirdparty/Trimmer.o -o Trimmer
mv HALC Splitter Trimmer bin
cp thirdparty/Chunker thirdparty/SeqChunker-dd thirdparty/SeqChunker-perl thirdparty/SeqChunker-sed thirdparty/interleave thirdparty/interleaved-split bin

[lanl001]

Hi,
I think it may be because you didn't run runHALC.py in the right way.

Try using runHLAC.py like this:
python ./runHALC.py long_reads.fa contigs.fa [-options|-options]

I hope this would help.