Create Python package by jeangud · Pull Request #19 · microsoft/satclip

jeangud · 2024-08-12T20:50:48Z

Description

The current setup seem to require that satclip be on a customized $PYTHONPATH, for example with:

export PYTHONPATH=${PYTHONPATH}:/path/to/satclip/satclip/

Moreover, it does not list dependencies and versioning (see Issue Missing requirements.txt file #8)

This PR proposes to setup satclip as a Python package to install it just like any other Python package, and facilitating its use from any directory, without the need to setup the PYTHONPATH.

Usage: pip install .

Example use cases:

Instantiate the SatCLIP PyTorch model: from satclip.model import SatCLIP
Re-use parts of satclip in different training scripts from satclip.location_encoder import LocationEncoder or again from satclip.main import SatCLIPLightningModule

PR changes

Added a pyproject.toml using setuptools as a build system, following the latest recommendations from Python packaging
Lists out main dependencies (albumentations, lightning, rasterio, torchgeo)
Modified internal imports to be relative to satclip package directory

Testing

From the repo top directory pip install . runs succesfully
Able to import satclip from any folder, without setting $PYTHONPATH:

$ cd ~
$ pwd
/home/user
$ echo $PYTHONPATH

$ python
Python 3.11.0 (main, Jul 29 2024, 13:47:50) [GCC 12.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import satclip
/home/user/.pyenv/versions/3.11.0/lib/python3.11/site-packages/kornia/feature/lightglue.py:44: FutureWarning: `torch.cuda.amp.custom_fwd(args...)` is deprecated. Please use `torch.amp.custom_fwd(args..., device_type='cuda')` instead.
  @torch.cuda.amp.custom_fwd(cast_inputs=torch.float32)
>>>

Example log output (click to expand)

Log from pip install .

$ pip install .
Processing /home/user/satclip
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting albumentations (from satclip==0.0.1)
Using cached albumentations-1.4.13-py3-none-any.whl.metadata (38 kB)
Collecting lightning==2.2.2 (from satclip==0.0.1)
Using cached lightning-2.2.2-py3-none-any.whl.metadata (53 kB)
Collecting pandas (from satclip==0.0.1)
Using cached pandas-2.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
Collecting rasterio>=1.3.10 (from satclip==0.0.1)
Using cached rasterio-1.3.10-cp311-cp311-manylinux2014_x86_64.whl.metadata (14 kB)
Collecting torchgeo>=0.5 (from satclip==0.0.1)
Using cached torchgeo-0.5.2-py3-none-any.whl.metadata (20 kB)
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Requirement already satisfied: mpmath>=0.19 in /home/user/.pyenv/versions/3.11.0/lib/python3.11/site-packages (from sympy->torch<4.0,>=1.13.0->lightning==2.2.2->satclip==0.0.1) (1.3.0)
Requirement already satisfied: mdurl~=0.1 in /home/user/.pyenv/versions/3.11.0/lib/python3.11/site-packages (from markdown-it-py>=2.2.0->rich<14.0,>=12.3.0->lightning[pytorch-extra]>=2->torchgeo>=0.5->satclip==0.0.1) (0.1.2)
Requirement already satisfied: importlib-resources>=1.4.0 in /home/user/.pyenv/versions/3.11.0/lib/python3.11/site-packages (from typeshed-client>=2.1.0->jsonargparse[signatures]<5.0,>=4.27.7; extra == "pytorch-extra"->lightning[pytorch-extra]>=2->torchgeo>=0.5->satclip==0.0.1) (6.4.0)
Using cached lightning-2.2.2-py3-none-any.whl (2.0 MB)
Using cached rasterio-1.3.10-cp311-cp311-manylinux2014_x86_64.whl (21.5 MB)
Using cached torchgeo-0.5.2-py3-none-any.whl (381 kB)
Using cached pandas-2.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB)
Using cached albumentations-1.4.13-py3-none-any.whl (171 kB)
Building wheels for collected packages: satclip
Building wheel for satclip (pyproject.toml) ... done
Created wheel for satclip: filename=satclip-0.0.1-py3-none-any.whl size=4017354 sha256=4e4af561efcaea8c268b353480d7a87f575904e9055dc0b653f15544292537c1
Stored in directory: /tmp/pip-ephem-wheel-cache-fal20ggn/wheels/3e/73/bd/53cd44af9d38c274b7928db633e7a5b0a095d97c6ad8fe0686
Successfully built satclip
Installing collected packages: rasterio, pandas, albumentations, lightning, torchgeo, satclip
Successfully installed albumentations-1.4.13 lightning-2.2.2 pandas-2.2.2 rasterio-1.3.10 satclip-0.0.1 torchgeo-0.5.2

jeangud · 2024-08-13T15:23:22Z

pyproject.toml

@@ -0,0 +1,39 @@
+[build-system]


This file is the main change in this PR

konstantinklemmer · 2024-09-18T13:30:11Z

Thank you so much for this @jeangud! Just a quick note: I am taking some time off currently but will get to this as soon as I am back to working. Thanks for your contributions to this project.

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jeangud commented Aug 13, 2024

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pyproject.toml

@@ -0,0 +1,39 @@

[build-system]

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This file is the main change in this PR

elijahrockers mentioned this pull request Apr 7, 2025

Modern Python Package Refactor (pyproject.toml, src layout, versioning) #25

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jeangud commented Aug 12, 2024 •

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