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Revise NEAT installation instructions in README
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Parallelization renaming in the utils folder scripts.
Merged template changes and put into new branch for unique PR.
Testing CLI and new tests for error and mutation models.
One-line change to Options class.
Tuple bug fixed.
RNG bug found in testing.
Splits logic.
Adding README changes now that bioconda works.
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I included the section neat model-qual-score because we're about to merge in the Markov code right after this.
keshav-gandhi
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Feb 28, 2026
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I took a look and ran a couple of basic tests, and I think we're good to merge!
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Will update if new pieces added. Currently includes: