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Relax the range restriction on 'has soma location'.#703

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gouttegd merged 2 commits into
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relax-has-soma-location-restriction
Mar 29, 2023
Merged

Relax the range restriction on 'has soma location'.#703
gouttegd merged 2 commits into
masterfrom
relax-has-soma-location-restriction

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The 'has soma location' (RO:0002100) should not have a range restriction to CARO's 'connected anatomical structure' (CARO:0000003), but rather to 'material anatomical entity' (CARO:0000006), which does not state anything about the "connectedness" of the entity that a neuron's soma may be located in.

closes #702

The 'has soma location' (RO:0002100) should not have a range restriction
to CARO's 'connected anatomical structure' (CARO:0000003), but rather to
'material anatomical entity' (CARO:0000006), which does not state
anything about the "connectedness" of the entity that a neuron's soma
may be located in.

closes #702
@gouttegd gouttegd self-assigned this Mar 29, 2023
@gouttegd gouttegd requested review from cmungall and dosumis March 29, 2023 10:10
Comment thread src/ontology/ro-edit.owl Outdated

AnnotationAssertion(obo:IAO_0000114 obo:RO_0002100 obo:IAO_0000125)
AnnotationAssertion(obo:IAO_0000115 obo:RO_0002100 "Relation between a neuron and an anatomical structure that its soma is part of."@en)
AnnotationAssertion(obo:IAO_0000115 obo:RO_0002100 "Relation between a neuron and an anatomical entity that its soma is part of."@en)

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Maybe specify 'material' anatomical entity here?

Make sure the text definition of 'has soma location' is aligned with the
range restriction and refers to a *material* anatomical entity.
@gouttegd gouttegd merged commit 7da344f into master Mar 29, 2023
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That’s ~590 unsatisfiability issues gone away with a one-line change. 🎉

“Never in the history of ontology editing have so many unsats been fixed by so few changes.” — Winston Churchill (almost)

@gouttegd gouttegd deleted the relax-has-soma-location-restriction branch March 29, 2023 11:01
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Must 'has soma location' be range-restricted to 'connected anatomical structure'?

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