Release 2021-08-31

• new relation "has component participant"
• new SWRL rule over RO:0002411

See git diff

release 2021-08-25

no changes

2021-08-04 release

Changes:

Left

• Ontology IRI: http://purl.obolibrary.org/obo/ro.owl
• Version IRI: http://purl.obolibrary.org/obo/ro/releases/2021-06-23/ro.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/ro.owl
• Version IRI: http://purl.obolibrary.org/obo/ro/releases/2021-08-04/ro.owl

GO_0044403 http://purl.obolibrary.org/obo/GO_0044403

Removed

• GO_0044403 SubClassOf is symbiosis some Self

GO_0072519 http://purl.obolibrary.org/obo/GO_0072519

Removed

• GO_0072519 SubClassOf is parasitism some Self

GO_0085030 http://purl.obolibrary.org/obo/GO_0085030

Removed

• GO_0085030 SubClassOf is mutualism some Self

GO_0085031 http://purl.obolibrary.org/obo/GO_0085031

Removed

• GO_0085031 SubClassOf is commensalism some Self

Rules

Removed

• enables(?x, ?y), occurs in(?y, ?z) -> part of(?x, ?z)
  • comment "This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps""

commensually interacts with http://purl.obolibrary.org/obo/RO_0002441

Removed

• commensually interacts with is symmetric relational form of process class GO_0085031

disease arises from structure http://purl.obolibrary.org/obo/RO_0004030

Removed

• disease arises from structure definition "A relationship between a disease and an anatomical structure where the material basis of the disease is some pathological change in the structure."

Added

• disease arises from structure definition "A relationship between a disease and an anatomical structure where the material basis of the disease is some pathological change in the structure. Anatomical structure includes cellular and sub-cellular entities, such as chromosome and organelles."

has phenotype http://purl.obolibrary.org/obo/RO_0002200

Removed

• has phenotype SubPropertyOf: topObjectProperty

has synaptic IO in http://purl.obolibrary.org/obo/RO_0013001

Removed

• has synaptic IO in label "has synaptic IO in"@en

Added

• has synaptic IO in label "has synaptic IO in region"@en

innervates http://purl.obolibrary.org/obo/RO_0002134

Removed

• innervates SubPropertyOf: topObjectProperty

interacts with via parasite-host interaction http://purl.obolibrary.org/obo/RO_0002443

Removed

• interacts with via parasite-host interaction is symmetric relational form of process class GO_0072519

mutualistically interacts with http://purl.obolibrary.org/obo/RO_0002442

Removed

• mutualistically interacts with is symmetric relational form of process class GO_0085030

obsolete actively participates in http://purl.obolibrary.org/obo/RO_0002217

Removed

• obsolete actively participates in label "obsolete actively participates in"@en

Added

• obsolete actively participates in label "obsolete actively participates in"^^string
• obsolete actively participates in term replaced by process has causal agent

obsolete has active participant http://purl.obolibrary.org/obo/RO_0002218

Removed

• obsolete has active participant in_subset eco subset

• obsolete has active participant definition "x has participant y if and only if x realizes some active role that inheres in y"

• obsolete has active participant has curation status pending final vetting

• obsolete has active participant editor note "This may be obsoleted and replaced by the original 'has agent' relation"

• obsolete has active participant example of usage "'heart development' has active participant some Shh protein"

Added

• obsolete has active participant definition "OBSOLETE x has participant y if and only if x realizes some active role that inheres in y"

• obsolete has active participant term replaced by causal agent in process

parasite of http://purl.obolibrary.org/obo/RO_0002444

Removed

• parasite of is asymmetric relational form of process class GO_0072519

phenotype of http://purl.obolibrary.org/obo/RO_0002201

Removed

• phenotype of SubPropertyOf: topObjectProperty

receives synaptic input from neuron http://purl.obolibrary.org/obo/RO_0013008

Added

• receives synaptic input from neuron label "receives synaptic input from neuron"@en

• receives synaptic input from neuron definition "A relationship between an anatomical structure (including cells) and a neuron that has a functionally relevant number of chemical synapses to it."

• receives synaptic input from neuron creation_date "2021-05-26T08:40:18Z"^^dateTime

• receives synaptic input from neuron created_by 0000-0002-1373-1705

• ObjectProperty: receives synaptic input from neuron

• receives synaptic input from neuron InverseOf sends synaptic output to cell

• receives synaptic input from neuron SubPropertyOf: synapsed by

receives synaptic input in http://purl.obolibrary.org/obo/RO_0013002

Removed

• receives synaptic input in label "receives synaptic input in"@en

Added

• receives synaptic input in label "receives synaptic input in region"@en

releases neurotransmitter http://purl.obolibrary.org/obo/RO_0002111

Removed

• releases neurotransmitter SubPropertyOf: topObjectProperty

sends synaptic output to http://purl.obolibrary.org/obo/RO_0013003

Removed

• sends synaptic output to label "sends synaptic output to"@en

Added

• sends synaptic output to label "sends synaptic output to region"@en ...

2021-06-23 release

this release incorporates the change of inheres in to characteristic of.

See #284

2021-03-08 Release

New relations:

• RO:0002801 (co-roosts with)
• RO:0012008 (results in fusion of)
• some removed property chains

2020-12-18 release

For changes see:

#414

2020-07-21

• New neuron to region connectivity relations added
• Edits and relations for GO (inc molecular-regulator)
• RO base release added

2020-02-26 release

Highlights:

• Tidying namespaces and errors reported by ROBOT
• Adding causal relations between material entities (Vasundra Toure)

2019-09-25 release

v2019-09-25

new release, fixes #324

2019-02-02 release

• removing incorrect subPropertyOf, fixes #298
• Correct ‘directly develops from’ definition error. Fixes #292.
• Make ‘causally downstream of’ also “disjoint” with overlaps via SWRL
• making enabled_by a subprop of has participant, fixes #249
• more specific has-input relations #230 #244
• Added curator notes to grouping relations
• Added property chain for disease-causes-dysfunction-of
• Additional domain/range constraints
• Irreflexivity axioms
• Use ODK in release process