Releases: oborel/obo-relations
Release list
2018-10-22 release
This is a maintenance release. It fixes an issue with the previous release where one of the import modules was left out.
2018-10-19 release
This release contains stronger domain and range constraints for various relations.
commit d852a55
Author: cmungall cjm@berkeleybop.org
Date: Fri Oct 19 12:12:05 2018 -0400
Including additional CARO classes in import, in particular the more general 'anatomical structure'
Broadening range for some developmental relations to AS. See https://github.com/obophenotype/uberon/issues/1455
commit 77d7387
Author: cmungall cjm@berkeleybop.org
Date: Fri Sep 28 13:54:47 2018 -0700
Further constraining located_in, see comments from Alan: https://github.com/oborel/obo-relations/pull/256#issuecomment-425558558
We keep the weaker D+R constraints in for EL purposes
commit ae9eae1
Author: cmungall cjm@berkeleybop.org
Date: Fri Sep 28 13:50:04 2018 -0700
mireot spatial region
commit a8554e8
Author: cmungall cjm@berkeleybop.org
Date: Wed Sep 26 11:31:24 2018 -0700
Adding SWRL for phosphorylates, see #259
commit 98157a6
Author: cmungall cjm@berkeleybop.org
Date: Wed Sep 26 11:20:55 2018 -0700
domain-range constrs
commit c677fb5
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 18:03:12 2018 -0700
domain-range constrs
commit e8c15a3
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 17:42:25 2018 -0700
Adding organism from CARO - may change label, see https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
commit c68f0a1
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 17:39:59 2018 -0700
domain/range
commit 5f61d08
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 17:20:52 2018 -0700
domain and range constraints
commit ddbe35e
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 16:52:26 2018 -0700
Separating out chemical relations into separate module
See also https://github.com/OBOFoundry/Experimental-OBO-Core/issues/7
commit e8ad2e9
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 16:52:24 2018 -0700
for-SLME
commit dbf86d2
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 16:52:07 2018 -0700
imports
commit 2a86292
Merge: 0619f28 185c458
Author: Chris Mungall cjm@berkeleybop.org
Date: Tue Sep 25 16:08:48 2018 -0700
Merge pull request #237 from oborel/issue-235-redux2
Obsoleted "related via dependence to"
commit 0619f28
Merge: 1c82785 a3db7f2
Author: Chris Mungall cjm@berkeleybop.org
Date: Tue Sep 25 16:02:45 2018 -0700
Merge pull request #256 from oborel/located-in-domain-range
Adding domain-range constraints for located_in, see #255
commit a3db7f2
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 11 15:39:26 2018 -0700
Adding domain-range constraints for located_in, see #255
note this changes introduces a spurious diff bringing in
AP declarations, this can be ignored
commit 1c82785
Merge: 8d29f03 ef15212
Author: Chris Mungall cjm@berkeleybop.org
Date: Thu Aug 30 16:57:53 2018 -0700
Merge pull request #233 from msinclair2/master
Add generically depends on and inverse generic bearer of
commit ef15212
Author: Michael Sinclair michael.sinclair@utah.edu
Date: Thu Aug 30 17:28:40 2018 -0600
create property chain with gdo and add is carrier of
commit 06a6e4f
Author: Michael Sinclair michael.sinclair@utah.edu
Date: Fri Jul 20 17:09:25 2018 -0600
removed generic bearer of, include only generically depends on per BFO spec
commit e3f5f5a
Author: Michael Sinclair michael.sinclair@utah.edu
Date: Mon Jun 25 13:46:02 2018 -0600
Add generically depends on and inverse generic bearer of
commit 8d29f03
Merge: 55a7f51 3f04c7d
Author: Chris Mungall cjm@berkeleybop.org
Date: Fri Aug 10 11:15:13 2018 -0700
Merge pull request #248 from oborel/cmungall-patch-2
Update README.md
commit 3f04c7d
Author: Chris Mungall cjm@berkeleybop.org
Date: Fri Aug 10 11:09:46 2018 -0700
Update README.md
Make google group canonical
commit 55a7f51
Author: Chris Mungall cjm@berkeleybop.org
Date: Tue Jul 31 08:52:39 2018 -0700
Update README.md
commit 33cff44
Merge: a216c15 7252617
Author: Chris Mungall cjm@berkeleybop.org
Date: Sun Jul 29 20:37:27 2018 -0700
Merge pull request #245 from oborel/atomic-redux
Making release of atomic (base) file
commit 7252617
Author: cmungall cjm@berkeleybop.org
Date: Sun Jul 29 20:28:36 2018 -0700
Renamed component to base
commit f21b93e
Author: cmungall cjm@berkeleybop.org
Date: Mon May 21 13:40:55 2018 -0700
First attempt at making atomic module, see https://github.com/INCATools/ontology-starter-kit/issues/50
Conflicts:
src/ontology/ro-edit.owl
commit a216c15
Merge: ff3fd1f b26fa8a
Author: Chris Mungall cjm@berkeleybop.org
Date: Sun Jul 29 20:13:53 2018 -0700
Merge pull request #232 from oborel/mortality_rate
Data property used to record increases in age-specific mortality rate
commit ff3fd1f
Merge: 65a367e 976634c
Author: Chris Mungall cjm@berkeleybop.org
Date: Sun Jul 29 20:13:13 2018 -0700
Merge pull request #234 from oborel/cmungall-patch-1
Update ro-idranges.owl
commit 65a367e
Merge: 953ec84 7107c3e
Author: Chris Mungall cjm@berkeleybop.org
Date: Thu Jul 26 18:20:16 2018 -0700
Merge pull request #243 from balhoff/issue-242
Remove inverse expression superproperty for ‘enabled by’.
commit 7107c3e
Author: Jim Balhoff jim@balhoff.org
Date: Thu Jul 26 10:34:21 2018 -0400
Remove inverse expression super property for ‘enabled by’.
commit 185c458
Author: cmungall cjm@berkeleybop.org
Date: Sun Jul 8 13:38:18 2018 -0700
Obsoleted "related via dependence to"
This was used to group causal relations and correlative relations.
The grouping was somewhat arbitrary and very poorly defined.
For now we should not group these two sets of relations
Fixes #235
commit 953ec84
Merge: d9fa8cd 87a13f3
Author: cmungall cjm@berkeleybop.org
Date: Sat Jul 7 12:40:27 2018 -0700
Merge branch 'master' of github.com:oborel/obo-relations
commit 976634c
Author: Chris Mungall cjm@berkeleybop.org
Date: Mon Jun 25 14:47:45 2018 -0700
Update ro-idranges.owl
Adding id range for @msinclair2
See #233
commit 87a13f3
Author: James A. Overton james@overton.ca
Date: Wed Jun 6 14:23:18 2018 -0400
Add diagrams for RO Core
- ROCore_Continuants.jpg shows continuant, occurrent, IDC, SDC, GDC, and the relations among them
- ROCore_SDCs.jpg focuses on the subtypes of SDC and their relations to IDC and occurrent
- ROCore.graffle is the source file for these two diagrams
commit b26fa8a
Author: dosumis dosumis@gmail.com
Date: Tue May 22 18:14:58 2018 +0100
Extended comments and refs.
commit d132eb9
Author: dosumis dosumis@gmail.com
Date: Tue May 22 18:06:41 2018 +0100
Adding data property used to record increases in age-specific mortality rate
2018-10-01 PRERELEASE
This is a pre-release
OWL available here:
https://raw.githubusercontent.com/oborel/obo-relations/v2018-09-25-PRELEASE/src/ontology/ro.owl
This release contains stronger domain and range constraints for various relations. It is possible that this will have knock-on effects of rendering classes that use these unsatisfiable. Unfortunately we don't have a readily plumbed-in of checking this en-masse across OBO at the moment.
Please comment on this PR:
#261
commit 77d7387
Author: cmungall cjm@berkeleybop.org
Date: Fri Sep 28 13:54:47 2018 -0700
Further constraining located_in, see comments from Alan: https://github.com/oborel/obo-relations/pull/256#issuecomment-425558558
We keep the weaker D+R constraints in for EL purposes
commit ae9eae1
Author: cmungall cjm@berkeleybop.org
Date: Fri Sep 28 13:50:04 2018 -0700
mireot spatial region
commit a8554e8
Author: cmungall cjm@berkeleybop.org
Date: Wed Sep 26 11:31:24 2018 -0700
Adding SWRL for phosphorylates, see #259
commit 98157a6
Author: cmungall cjm@berkeleybop.org
Date: Wed Sep 26 11:20:55 2018 -0700
domain-range constrs
commit c677fb5
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 18:03:12 2018 -0700
domain-range constrs
commit e8c15a3
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 17:42:25 2018 -0700
Adding organism from CARO - may change label, see https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
commit c68f0a1
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 17:39:59 2018 -0700
domain/range
commit 5f61d08
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 17:20:52 2018 -0700
domain and range constraints
commit ddbe35e
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 16:52:26 2018 -0700
Separating out chemical relations into separate module
See also https://github.com/OBOFoundry/Experimental-OBO-Core/issues/7
commit e8ad2e9
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 16:52:24 2018 -0700
for-SLME
commit dbf86d2
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 25 16:52:07 2018 -0700
imports
commit 2a86292
Merge: 0619f28 185c458
Author: Chris Mungall cjm@berkeleybop.org
Date: Tue Sep 25 16:08:48 2018 -0700
Merge pull request #237 from oborel/issue-235-redux2
Obsoleted "related via dependence to"
commit 0619f28
Merge: 1c82785 a3db7f2
Author: Chris Mungall cjm@berkeleybop.org
Date: Tue Sep 25 16:02:45 2018 -0700
Merge pull request #256 from oborel/located-in-domain-range
Adding domain-range constraints for located_in, see #255
commit a3db7f2
Author: cmungall cjm@berkeleybop.org
Date: Tue Sep 11 15:39:26 2018 -0700
Adding domain-range constraints for located_in, see #255
note this changes introduces a spurious diff bringing in
AP declarations, this can be ignored
commit 1c82785
Merge: 8d29f03 ef15212
Author: Chris Mungall cjm@berkeleybop.org
Date: Thu Aug 30 16:57:53 2018 -0700
Merge pull request #233 from msinclair2/master
Add generically depends on and inverse generic bearer of
commit ef15212
Author: Michael Sinclair michael.sinclair@utah.edu
Date: Thu Aug 30 17:28:40 2018 -0600
create property chain with gdo and add is carrier of
commit 06a6e4f
Author: Michael Sinclair michael.sinclair@utah.edu
Date: Fri Jul 20 17:09:25 2018 -0600
removed generic bearer of, include only generically depends on per BFO spec
commit e3f5f5a
Author: Michael Sinclair michael.sinclair@utah.edu
Date: Mon Jun 25 13:46:02 2018 -0600
Add generically depends on and inverse generic bearer of
commit 8d29f03
Merge: 55a7f51 3f04c7d
Author: Chris Mungall cjm@berkeleybop.org
Date: Fri Aug 10 11:15:13 2018 -0700
Merge pull request #248 from oborel/cmungall-patch-2
Update README.md
commit 3f04c7d
Author: Chris Mungall cjm@berkeleybop.org
Date: Fri Aug 10 11:09:46 2018 -0700
Update README.md
Make google group canonical
commit 55a7f51
Author: Chris Mungall cjm@berkeleybop.org
Date: Tue Jul 31 08:52:39 2018 -0700
Update README.md
commit 33cff44
Merge: a216c15 7252617
Author: Chris Mungall cjm@berkeleybop.org
Date: Sun Jul 29 20:37:27 2018 -0700
Merge pull request #245 from oborel/atomic-redux
Making release of atomic (base) file
commit 7252617
Author: cmungall cjm@berkeleybop.org
Date: Sun Jul 29 20:28:36 2018 -0700
Renamed component to base
commit f21b93e
Author: cmungall cjm@berkeleybop.org
Date: Mon May 21 13:40:55 2018 -0700
First attempt at making atomic module, see https://github.com/INCATools/ontology-starter-kit/issues/50
Conflicts:
src/ontology/ro-edit.owl
commit a216c15
Merge: ff3fd1f b26fa8a
Author: Chris Mungall cjm@berkeleybop.org
Date: Sun Jul 29 20:13:53 2018 -0700
Merge pull request #232 from oborel/mortality_rate
Data property used to record increases in age-specific mortality rate
commit ff3fd1f
Merge: 65a367e 976634c
Author: Chris Mungall cjm@berkeleybop.org
Date: Sun Jul 29 20:13:13 2018 -0700
Merge pull request #234 from oborel/cmungall-patch-1
Update ro-idranges.owl
commit 65a367e
Merge: 953ec84 7107c3e
Author: Chris Mungall cjm@berkeleybop.org
Date: Thu Jul 26 18:20:16 2018 -0700
Merge pull request #243 from balhoff/issue-242
Remove inverse expression superproperty for ‘enabled by’.
commit 7107c3e
Author: Jim Balhoff jim@balhoff.org
Date: Thu Jul 26 10:34:21 2018 -0400
Remove inverse expression super property for ‘enabled by’.
commit 185c458
Author: cmungall cjm@berkeleybop.org
Date: Sun Jul 8 13:38:18 2018 -0700
Obsoleted "related via dependence to"
This was used to group causal relations and correlative relations.
The grouping was somewhat arbitrary and very poorly defined.
For now we should not group these two sets of relations
Fixes #235
commit 953ec84
Merge: d9fa8cd 87a13f3
Author: cmungall cjm@berkeleybop.org
Date: Sat Jul 7 12:40:27 2018 -0700
Merge branch 'master' of github.com:oborel/obo-relations
commit 976634c
Author: Chris Mungall cjm@berkeleybop.org
Date: Mon Jun 25 14:47:45 2018 -0700
Update ro-idranges.owl
Adding id range for @msinclair2
See #233
commit 87a13f3
Author: James A. Overton james@overton.ca
Date: Wed Jun 6 14:23:18 2018 -0400
Add diagrams for RO Core
- ROCore_Continuants.jpg shows continuant, occurrent, IDC, SDC, GDC, and the relations among them
- ROCore_SDCs.jpg focuses on the subtypes of SDC and their relations to IDC and occurrent
- ROCore.graffle is the source file for these two diagrams
commit b26fa8a
Author: dosumis dosumis@gmail.com
Date: Tue May 22 18:14:58 2018 +0100
Extended comments and refs.
commit d132eb9
Author: dosumis dosumis@gmail.com
Date: Tue May 22 18:06:41 2018 +0100
Adding data property used to record increases in age-specific mortality rate
2018-07-29 release
This is the correct version of:
https://github.com/oborel/obo-relations/releases/v2018-07-29
2018-07-29 release (DO NOT USE THIS ONE)
NOTE due to a release error many of the changes below were not incorporated. See instead https://github.com/oborel/obo-relations/releases/v2018-07-29b
commit f21b93e
Author: cmungall cjm@berkeleybop.org
Date: Mon May 21 13:40:55 2018 -0700
First attempt at making atomic module, see https://github.com/INCATools/ontology-starter-kit/issues/50
Conflicts:
src/ontology/ro-edit.owl
commit a216c15
Merge: ff3fd1f b26fa8a
Author: Chris Mungall cjm@berkeleybop.org
Date: Sun Jul 29 20:13:53 2018 -0700
Merge pull request #232 from oborel/mortality_rate
Data property used to record increases in age-specific mortality rate
commit 7107c3e
Author: Jim Balhoff jim@balhoff.org
Date: Thu Jul 26 10:34:21 2018 -0400
Remove inverse expression super property for ‘enabled by’.
commit b26fa8a
Author: dosumis dosumis@gmail.com
Date: Tue May 22 18:14:58 2018 +0100
Extended comments and refs.
commit d132eb9
Author: dosumis dosumis@gmail.com
Date: Tue May 22 18:06:41 2018 +0100
Adding data property used to record increases in age-specific mortality rate
commit 38906e1
Author: cmungall cjm@berkeleybop.org
Date: Fri May 11 13:34:28 2018 -0700
2018-05-11 release
commit 38906e1
Author: cmungall cjm@berkeleybop.org
Date: Fri May 11 13:34:28 2018 -0700
- Fixed def of acts-upstream-of, Fixes #228
commit 7978166
Author: cmungall cjm@berkeleybop.org
Date: Fri May 11 13:34:13 2018 -0700
- added involved in subPropertyOf active participant in
2018-03-28 release
Minor release, one change
commit 7a3e01a
Date: Wed Mar 28 16:12:35 2018 -0700
weakening domain constraint for has-modifier
2018-03-13 release
Original Ontology
- IRI: http://purl.obolibrary.org/obo/ro.owl
- VersionIRI: http://purl.obolibrary.org/obo/ro/releases/2018-01-05b/ro.owl
New Ontology
- IRI: http://purl.obolibrary.org/obo/ro.owl
- VersionIRI: http://purl.obolibrary.org/obo/ro/releases/2018-03-13/ro.owl
Report for classes
Class objects lost from source: 0
Class objects new in target: 0
Changed Class objects: 0
Report for properties
ObjectProperty objects lost from source: 0
ObjectProperty objects new in target: 7
New ObjectProperty : causally upstream of or within, negative effect
- causally upstream of or within, negative effect label causally upstream of or within, negative effect
- SubObjectPropertyOf( causally upstream of or within, negative effect causally upstream of or within )
- causally upstream of or within, negative effect created by cjm
- causally upstream of or within, negative effect is negative form of causally upstream of or within
- causally upstream of or within, negative effect creation date 2018-03-13T23:55:05Z
New ObjectProperty : causally upstream of or within, positive effect
- causally upstream of or within, positive effect label causally upstream of or within, positive effect
- causally upstream of or within, positive effect created by cjm
- SubObjectPropertyOf( causally upstream of or within, positive effect causally upstream of or within )
- causally upstream of or within, positive effect is positive form of causally upstream of or within
- causally upstream of or within, positive effect creation date 2018-03-13T23:55:19Z
New ObjectProperty : enables subfunction
- SubObjectPropertyOf( enables subfunction functionally related to )
- enables subfunction label enables subfunction
- enables subfunction definition Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
- enables subfunction created by cjm
- enables subfunction creation date 2018-01-25T23:20:13Z
New ObjectProperty : acts upstream of or within, positive effect
- acts upstream of or within, positive effect is positive form of acts upstream of or within
- acts upstream of or within, positive effect created by cjm
- acts upstream of or within, positive effect creation date 2018-01-26T23:49:30Z
- SubObjectPropertyOf( acts upstream of or within, positive effect acts upstream of or within )
- acts upstream of or within, positive effect seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect
- acts upstream of or within, positive effect label acts upstream of or within, positive effect
New ObjectProperty : acts upstream of or within, negative effect
- acts upstream of or within, negative effect is negative form of acts upstream of or within
- acts upstream of or within, negative effect label acts upstream of or within, negative effect
- acts upstream of or within, negative effect creation date 2018-01-26T23:49:51Z
- SubObjectPropertyOf( acts upstream of or within, negative effect acts upstream of or within )
- acts upstream of or within, negative effect created by cjm
New ObjectProperty : acts upstream of, positive effect
- acts upstream of, positive effect definition c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
- SubObjectPropertyOf( acts upstream of, positive effect acts upstream of or within, positive effect )
- SubObjectPropertyOf( acts upstream of, positive effect acts upstream of )
- acts upstream of, positive effect seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect
- acts upstream of, positive effect label acts upstream of, positive effect
- acts upstream of, positive effect creation date 2018-01-26T23:53:14Z
- acts upstream of, positive effect is positive form of acts upstream of
- acts upstream of, positive effect created by cjm
New ObjectProperty : acts upstream of, negative effect
- acts upstream of, negative effect definition c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
- acts upstream of, negative effect label acts upstream of, negative effect
- acts upstream of, negative effect creation date 2018-01-26T23:53:22Z
- SubObjectPropertyOf( acts upstream of, negative effect acts upstream of )
- acts upstream of, negative effect seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect
- acts upstream of, negative effect is negative form of acts upstream of
- SubObjectPropertyOf( acts upstream of, negative effect acts upstream of or within, negative effect )
- acts upstream of, negative effect created by cjm
Changed ObjectProperty objects: 12
Changes for: involved in positive regulation of
- Added
- + [involved in p...
2018-01-22 release
Minor fix - updated imported GO
2018-01-05 release
v2018-01-05b fixed release