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    • Blazing-Fast Bioinformatic Operations on Python DataFrames
      Python
      Apache License 2.0
      30159355Updated Apr 29, 2026Apr 29, 2026
    • Apache DataFusion functions for bioinformatic operations
      Rust
      Apache License 2.0
      112520Updated Apr 29, 2026Apr 29, 2026
    • Jupyter Notebook
      Apache License 2.0
      47531Updated Apr 28, 2026Apr 28, 2026
    • vepyr

      Public
      vepyr (/ˈvaɪpər/) — VEP Yielding Performant Results — a blazing-fast Rust reimplementation of Ensembl's Variant Effect Predictor.
      Python
      Apache License 2.0
      0522Updated Apr 27, 2026Apr 27, 2026
    • Apache DataFusion table providers for bioinformatic file formats
      Rust
      Other
      271217Updated Apr 25, 2026Apr 25, 2026
    • Benchmarks of various genomic ranges operations
      Jupyter Notebook
      Apache License 2.0
      1020Updated Apr 25, 2026Apr 25, 2026
    • Python
      0000Updated Apr 23, 2026Apr 23, 2026
    • noodles

      Public
      Bioinformatics I/O libraries in Rust
      Rust
      MIT License
      71001Updated Mar 4, 2026Mar 4, 2026
    • sequila-native

      Public archive
      A set of native implementation of common bioinformatics algorithms to be used as Arrow-Datafusion or SeQuiLa (Apache Spark) extensions.
      Rust
      Apache License 2.0
      01180Updated Feb 16, 2026Feb 16, 2026
    • Jupyter Notebook
      Apache License 2.0
      0000Updated Feb 14, 2026Feb 14, 2026
    • gdl-infra

      Public
      Infrastructure for genomic open data lakehouse
      Go Template
      0000Updated Feb 1, 2026Feb 1, 2026
    • Jupyter Notebook
      1100Updated Oct 26, 2025Oct 26, 2025
    • Fast FASTX parsing and k-mer methods in Rust
      Rust
      MIT License
      31000Updated Sep 17, 2025Sep 17, 2025
    • Jupyter Notebook
      Apache License 2.0
      0100Updated Sep 15, 2025Sep 15, 2025
    • Python
      0000Updated Sep 14, 2025Sep 14, 2025
    • Apache DataFusion Python Bindings
      Python
      Apache License 2.0
      152000Updated Aug 23, 2025Aug 23, 2025
    • evo2

      Public
      Genome modeling and design across all domains of life
      Jupyter Notebook
      Apache License 2.0
      487000Updated Mar 23, 2025Mar 23, 2025
    • TeX
      MIT License
      0001Updated Mar 20, 2025Mar 20, 2025
    • Self service for Data Science labs
      HCL
      Apache License 2.0
      48021Updated Jan 18, 2025Jan 18, 2025
    • Apache DataFusion Comet Spark Accelerator
      Rust
      Apache License 2.0
      307001Updated Nov 24, 2024Nov 24, 2024
    • phenodb

      Public
      Serverless vector database for deep phenotyping
      Apache License 2.0
      0000Updated Aug 29, 2024Aug 29, 2024
    • Fine-tuning LLaMA 2 for rare disease concept normalization
      Jupyter Notebook
      3000Updated Aug 9, 2024Aug 9, 2024
    • sequila

      Public
      SeQuiLa: Distributed analytics for genomics based on Apache Spark!
      HTML
      Apache License 2.0
      710238Updated Aug 2, 2024Aug 2, 2024
    • PhenoGPT

      Public
      Jupyter Notebook
      MIT License
      8000Updated May 16, 2024May 16, 2024
    • Launcher shortcuts for classic Jupyter Notebook & JupyterLab
      Python
      BSD 3-Clause "New" or "Revised" License
      10000Updated Feb 26, 2024Feb 26, 2024
    • PhenoTagger
      GAP
      MIT License
      16000Updated Jan 24, 2024Jan 24, 2024
    • rnafusion

      Public
      RNA-seq analysis pipeline for detection gene-fusions
      Nextflow
      MIT License
      120000Updated Dec 1, 2023Dec 1, 2023
    • rust-bio

      Public
      This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tes…
      Rust
      MIT License
      215100Updated Nov 18, 2023Nov 18, 2023
    • coitrees

      Public
      A very fast interval tree data structure
      Rust
      MIT License
      10000Updated Nov 10, 2023Nov 10, 2023
    • iitii

      Public
      Implicit Interval Tree with Interpolation Index
      Jupyter Notebook
      Apache License 2.0
      4000Updated Nov 9, 2023Nov 9, 2023
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