Add troubleshooting guide for Protégé on Arch Linux#1315
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ZanelloG wants to merge 1 commit intoprotegeproject:masterfrom
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Add troubleshooting guide for Protégé on Arch Linux#1315ZanelloG wants to merge 1 commit intoprotegeproject:masterfrom
ZanelloG wants to merge 1 commit intoprotegeproject:masterfrom
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Documented issues and solutions for running Protégé 5.6.4 on Arch Linux with Java 17, including temporary and permanent fixes.
gouttegd
reviewed
Jan 3, 2026
gouttegd
reviewed
Jan 3, 2026
| ## Permanent Fix (Developer Solution) | ||
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| For a long-term solution, developers should: | ||
| 1) NodeSerialiser: Replace usage of com.sun.org.apache.xml.internal.serialize.OutputFormat with standard JAXP (javax.xml.transform) or external libraries like Apache Xerces. |
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This is an issue, not in Protégé itself (this repo), but in the mdock “docking framework”. And it has been fixed there, but no new release of that library has happened since the fix was merged in.
gouttegd
reviewed
Jan 3, 2026
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| For a long-term solution, developers should: | ||
| 1) NodeSerialiser: Replace usage of com.sun.org.apache.xml.internal.serialize.OutputFormat with standard JAXP (javax.xml.transform) or external libraries like Apache Xerces. | ||
| 2) RDFTranslator / OWL API: Update method calls or fix the OWL API version dependency to match the one Protege 5.6.4 was compiled against. |
Collaborator
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This is a similar situation as above: this has already been fixed in the RDF Library package, but the fix is only in the master branch, not in a released version.
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Documented issues and solutions for running Protégé 5.6.4 on Arch Linux with Java 17, including temporary and permanent fixes.