Update imports to htslib/samtools/bcftools 1.23#1372
Merged
jmarshall merged 2 commits intopysam-developers:masterfrom Jan 12, 2026
Merged
Update imports to htslib/samtools/bcftools 1.23#1372jmarshall merged 2 commits intopysam-developers:masterfrom
jmarshall merged 2 commits intopysam-developers:masterfrom
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For each package:
rm -rf htslib; python3 devtools/import.py htslib .../htslib-1.23
rm -rf samtools; python3 devtools/import.py samtools .../samtools-1.23
rm -rf bcftools; python3 devtools/import.py bcftools .../bcftools-1.23
Take care to preserve the #define additions to bcftools/regidx.h.
(Don't bother adding {sam,bcf}tools/htslib-1.23/{LICENSE,**/README}.)
Also take care to preserve removing the regeneration of htscodecs.mk
from htslib/Makefile.
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Import upstream htslib/samtools/bcftools 1.23. Significant additional considerations:
#defineadditions to bcftools/regidx.h.HTSlib 1.23 fixes #1355 so merging this import can close that issue.