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Clean Up ProcessTable and Replace Constructor-Side-Effect Validation

Status: Open.

#235 In saeyslab/harpy;

· ArneDefauw opened on Apr 17, 2026

Optimize ProcessTable._get_adata() for .obs-only updates

Status: Open.

#233 In saeyslab/harpy;

· ArneDefauw opened on Apr 2, 2026

allow bins="auto" in hp.qc.image_histogram

Status: Open.

#232 In saeyslab/harpy;

· ArneDefauw opened on Apr 1, 2026

Extend niche analysis methods beyond nhood_kmeans and nhood_lda

enhancementNew feature or requestNew feature or request

Status: Open.

#230 In saeyslab/harpy;

· ArneDefauw opened on Mar 31, 2026

harpy.tb.bin_counts

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#227 In saeyslab/harpy;

· ArneDefauw opened on Mar 28, 2026

harpy.im.transcript_density

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#226 In saeyslab/harpy;

· ArneDefauw opened on Mar 27, 2026

harpy.pl.plot_transcript_density

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#225 In saeyslab/harpy;

· ArneDefauw opened on Mar 26, 2026

Only add valid shapes when calling harpy.sh.add_shapes_layer

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#224 In saeyslab/harpy;

· ArneDefauw opened on Mar 26, 2026

add sensible default for coordinates in harpy.tb.add_points_layer

enhancementNew feature or requestNew feature or request

Status: Open.

#223 In saeyslab/harpy;

· ArneDefauw opened on Mar 26, 2026

docs merge labels layers

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#193 In saeyslab/harpy;

· ArneDefauw opened on Feb 17, 2026

Documentation error harpy.im.rasterize

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#179 In saeyslab/harpy;

· julienmortier opened on Jan 6, 2026

xenium PyArrow OSError: Unexpected end of stream

bugSomething isn't workingSomething isn't working

Status: Open.

#168 In saeyslab/harpy;

· ArneDefauw opened on Nov 25, 2025