Python library for analysis of neuroanatomical data.

A dynamic connectome mapping module in python.

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

A performant, powerful query framework to search for network motifs

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

Tools to work with the FlyWire connectome. Fully interoperable with navis.

An Explainable Geometric-Weighted Graph Attention Network (xGW-GAT) for Identifying Functional Networks Associated with Gait Impairment

Embodied Drosophila: 138,639-neuron whole-brain connectome simulation (FlyWire v783) in a biomechanical body (NeuroMechFly v2 / MuJoCo). Vision, olfaction, gustation, flight, and emergent behaviors — all from the real connectome.

GNN with summarization/grouping layer for speed and interpretability

Meta-learning using graph neural networks for brain connectivity regression.

Supplemental source code for Nern et al. 2025: "Connectome-driven neural inventory of a complete visual system" (https://doi.org/10.1038/s41586-025-08746-0). The Cell type explorer repository is at https://github.com/reiserlab/male-drosophila-visual-system-connectome

ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).

A paper investigating bilateral symmetry of connectome networks.

Code base for our paper "Connectivity-Inspired Network for Context-Aware Recognition" (ECCV 2024, Human-inspired Computer Vision workshop)

Methods for estimating time-varying functional connectivity (TVFC)

maintainance of the code for complex network analysis based modeling of Event Related Potential (ERP) electroencephalography (EEG) data from baby brain, can be applied to other data, including human brain.

Solution for CNI Machine Learning Challenge

Python tool for spatially normalizing diffusion MRI data

Modified GoPiGo bot connectome source to work on my custom robot.

A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.