An R package to infer and analyze synteny networks from protein sequences

Detection of outlier genes and species in phylogenomics

Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣

AstralPlane: R Package For Preparing, Running, Analyzing and Plotting from the Species Tree Program ASTRAL-III

Datasets and scripts for "Coalescent-based branch length estimation improves dating of species trees" paper

Scripts for Hill et al. (2025) doi:10.1186/s12864-025-11432-0 🌾

Evolutionary genomics of chromosomal inversions in Atlantic herring

CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each sequence which can be used to calculate distances among sequences.

Differential Gene Expression, Phylogenetic tree, Sequence Alignments, Biostatistics, Bioinformatic

Target Capture (aka Hyb-seq) marker vetting using WGS data.

Docker and Apptainer setup for the BEAST 2 software

Genome-based taxonomy of Lactobacillaceae on the species level

Macroevolutionary analyses of the Monodoreae tribe (Annonaceae) 🧬🌳🌍

R package for identifying discordant phylogenetic trees in a sample

Integrative species delimitation in the Myrcia neoobscura complex

Species-level phylogeny and biogeography of the POS-clade (Arecaceae) with special focus on the disjunct distribution of Orania, using the target capture loci of Heyduk et al. 2016 (doi: 10.1111/bij.12551) • Second part: testing the 'time-for-speciation' hypothesis in Madagascan palms

Code for the study: Integrating Lineage-specific and Universal Genomic Probes Illuminates Phylogenetic Relationships and Complex Evolutionary Processes within Ochnaceae

Tools for DNA sequence retrieval, alignment, concatenation, and phylogenetic analysis in R

Genome-based taxonomy of Lactobacillaceae on the genus level