Github project to help us collaborate on this project in an organized way.
To set up and activate the required conda environment, run
conda env create -f environment.yaml
conda activate connectome-harmonics
To add this environment to jupyter, you'll need to run
python -m ipykernel install --user --name connectome-harmonics
The organizational principle here is that each jupyter notebook should perform one analysis, or convey one idea. Code which is shared between multiple notebooks should be placed in utils, ideally also separated out into small files.
the .gitignore file will ignore anything put into /scratchwork, so you can put your scratch work there.