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[BugFix][MoE] Warm up FlashInfer b12x NVFP4 MoE to avoid mid-serving JIT stall (#47458) - #47599

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[BugFix][MoE] Warm up FlashInfer b12x NVFP4 MoE to avoid mid-serving JIT stall (#47458)#47599
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anmolxlight:fix-47458-flashinfer-b12x-moe-jit-stall

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@anmolxlight anmolxlight commented Jul 4, 2026

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CI is gated pending a maintainer label. The pre-run check reports:
PR must have the verified or ready label or the author must have at least 4 merged PRs (found 0). This is my first contribution, so the CI pipeline
can't start on its own. Could a maintainer please add the ready label
(or verified) to trigger CI?
Happy to address any review feedback once
the checks run. Thanks!

Purpose

Fixes #47458 — a ~17.5s engine-wide, stop-the-world stall on the FlashInfer
flashinfer_b12x NVFP4 MoE backend (SM120/SM121) when the request mix
transitions from large/long-context prefills to a burst of small requests.
Every in-flight request (including ones mid-decode) freezes simultaneously,
and it recurs under sustained mixed-shape load.

Root cause

Per the diagnosis in the issue and the follow-up narrowing in the comment
thread, the stall is CPU-bound CuteDSL (MLIR) JIT compilation, not a slow
GPU kernel:

  • The flashinfer_b12x fused MoE is a CuteDSL kernel that lazily JIT-compiles
    a specialization per input-shape bucket.
  • Its small-token ("micro") path keys the compiled kernel on both
    num_tokens and the internal shared workspace's max_rows.
  • A large prefill grows that shared workspace. Because max_rows is part of
    the cache key, growing it invalidates the previously-compiled small-batch
    kernels
    . The next small request then eats a multi-second, engine-blocking
    recompile — the stop-the-world stall. Under mixed load it recurs each time a
    large shape re-grows the workspace after small kernels were compiled.

(The original "GDN CuteDSL prefill" theory doesn't hold on SM120 — that path is
platform-gated off there — the _cutlass_ir frames come from the b12x MoE
path, which is the CuteDSL consumer active in this config.)

Fix

Add a startup warmup, flashinfer_b12x_moe_warmup, wired into
kernel_warmup(). When (and only when) the b12x MoE backend is actually in use
on SM120, it:

  1. runs a dummy forward at the max token count first, growing the
    shared workspace to its serving-time high-water mark, then
  2. runs dummy forwards at the small micro-path token sizes, so those
    kernels JIT-compile against the final workspace and stay cache-valid for
    the whole session.

Ordering is the crux: the large shape must establish max_rows before the
small-shape kernels compile, otherwise the first real large prefill would
invalidate them again. It's placed after the large-shape warmup sweep and
before CUDA-graph capture / the JIT monitor is armed. Each rank warms
independently (the stall is per-rank; PP ranks pay it sequentially).

It is a no-op for every non-b12x deployment — cheap platform + module-walk
gates return immediately.

Reuse-of-real-path note: the warmup drives model_runner._dummy_run(...)
(the same mechanism the existing FlashInfer-attention warmup already uses in
kernel_warmup), so the kernel is exercised through the genuine forward path
with correct FP4 inputs/scales rather than hand-constructed tensors.

Test plan

  • ruff check + ruff format --check pass on all changed files.
  • Added CPU-only unit tests
    (tests/model_executor/warmup/test_flashinfer_b12x_moe_warmup.py) covering
    the token-size selection (descending, max-first, dedup, filtering, empty
    budget) and the b12x-layer detection walk (positive + negative).
  • Requires human validation on SM120 hardware (I do not have access to
    an SM120 GPU): run the issue's repro (6 large distinct prefills →
    small-request burst → sustained mixed load) with --moe-backend=flashinfer_b12x
    and jit_monitor_mode=error, and confirm no b12x CuteDSL compile fires
    during serving and the stall is gone. Please also run the GPU-gated
    tests/kernels/moe/test_flashinfer_b12x_moe.py.

Duplicate-work check

gh issue view 47458 --comments, gh pr list --search "47458 in:body", and
searches for flashinfer b12x moe / b12x warmup turned up no open PR adding
a b12x MoE warmup or otherwise addressing this JIT stall. The existing open
b12x PRs (#47392 activation plumbing, #47577 auto-select, #43687 cutlass
prefill threshold, etc.) are orthogonal.

Note on AI assistance

This change was written with AI assistance (Claude). The root-cause reasoning
follows the issue + comment thread; the code follows the existing
vllm/model_executor/warmup/* conventions (deepseek_v4_mhc_warmup,
deep_gemm_warmup, the FlashInfer-attention _dummy_run warmup). Per
AGENTS.md, the SM120 runtime validation and full test run must be completed
by the human submitter before merge.

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Claude Code Review

This pull request is from a fork — automated review is disabled. A repository maintainer can comment @claude review to run a one-time review.

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@mergify mergify Bot added nvidia bug Something isn't working labels Jul 4, 2026

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# ``num_tokens`` in this region compiles its own kernel specialization, so we
# warm a representative set (powers of two up to 256); the cudagraph capture
# sizes are folded in on top of these.
_MICRO_TOKEN_CANDIDATES = (1, 2, 4, 8, 16, 32, 64, 128, 256)

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P2 Badge Warm every eager micro-token shape

When CUDA graphs are disabled (for example --enforce-eager / cudagraph_mode=NONE) there are no cudagraph_capture_sizes, so this list is the only coverage for small b12x MoE shapes. The comment says each distinct num_tokens in the micro region compiles its own specialization, but counts such as 3, 5, 6, 7, 9, etc. are not warmed after the max-token workspace growth; the first real small request with one of those token counts can still trigger the same mid-serving JIT stall this warmup is intended to eliminate. Consider warming the actual micro range for eager/no-graph configurations, or otherwise deriving the exact runtime bucket sizes rather than only powers of two.

Useful? React with 👍 / 👎.

@waynehacking8

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Ran the mechanism on an RTX PRO 6000 (flashinfer wheel 0.6.12 - moe_dispatch.py is byte-identical to the 0.6.13 vllm pins) with a synthetic MoE (E=32, topk=4, bf16-in) driving B12xMoEWrapper.run the way FlashInferB12xExperts does. Three datapoints that may help tune the warm set:

  1. The ordering claim holds: after running m=64 then m=8 once (19.0s / 15.7s first-hit compiles), repeating both hits the cache at <1ms.

  2. One nuance vs the PR description: a large prefill does not invalidate the micro kernels. m=8, m=4096, m=8 leaves the third call at 0.7ms, because routed_rows > 640 takes the dynamic backend, and backend is part of the workspace cache key in _get_cached_workspace - the dynamic workspace is a separate entry. The invalidation behind [Bug] ~17.5s engine-wide stall on large-to-small request shape transitions (NVFP4/b12x, GDN CuteDSL prefill kernel) #47458 is growth within the static region: m=8, m=64, m=8 recompiles the third call (15.2s), since both share the static workspace and 64 replaces it.

  3. That leaves a residual hole in the warm set: a serving token count in the static region above the largest warmed static size grows the static workspace and re-invalidates everything you warmed. After warming 64 and 8, an unwarmed m=100 (routed_rows 400, still under the 640 cutover) forced m=8 to recompile again (15.1s). Note the max_num_batched_tokens run goes down the dynamic path, so it does not set the static workspace's high-water mark. Adding the static-region ceiling - floor(640/topk) tokens, cutover from moe_dispatch - to the warm set would put the static workspace at its true max, so unwarmed in-between sizes only pay their own one-time compile instead of cascading.

FWIW flashinfer#3836 (pending upstream) buckets the workspace allocation, which makes growth events O(log) but keeps max_rows in the micro key, so the warmup and the ceiling-size point stay relevant either way.

@anmolxlight

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Great analysis — point #3 is spot on.

The fix adds _STATIC_REGION_ROUTED_ROWS = 640 to the warmup module and includes min(max_tokens, 640 // experts_per_token) in the warmup token set. The module's top_k is read from the b12x MoE layer itself, so the ceiling is computed correctly per-model.

With this change:

  • The static workspace reaches its true high-water mark during warmup (instead of max_num_batched_tokens routing through the dynamic path and leaving the static workspace undersized).
  • Unwarmed in-between sizes still pay a one-time self-compile, but no longer cascade-invalidate the micro-path kernels that were already compiled.
  • Ordering is preserved: descending sort means the ceiling runs first (growing the static workspace), then the micro-path sizes compile against the final workspace.

Thanks for the careful data!

The warmup's largest token size (max_num_batched_tokens) routes through
the dynamic MoE backend because routed_rows > 640, so it doesn't grow
the static workspace to its true high-water mark. Add the static-region
ceiling (640 // experts_per_token) so the static workspace reaches its
maximum during warmup and small-path kernels aren't invalidated by
mid-serving requests in the static region.

Per waynehacking8's review: the micro-path kernels key on both
num_tokens and the shared workspace's max_rows, and a request in the
static region above the warmed sizes grows the workspace and cascades
recompilation. Warming the ceiling puts the static workspace at its
true maximum up front.

Signed-off-by: Anmol Mishra <anmolx.work@gmail.com>
@mergify mergify Bot added ci/build deepseek Related to DeepSeek models rust llama Related to Llama models multi-modality Related to multi-modality (#4194) mistral Related to Mistral models performance Performance-related issues qwen Related to Qwen models gpt-oss Related to GPT-OSS models rocm Related to AMD ROCm intel-gpu Related to Intel GPU cpu Related to CPU backends structured-output v1 tpu Related to Google TPUs tool-calling labels Jul 8, 2026
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bug Something isn't working ci/build cpu Related to CPU backends deepseek Related to DeepSeek models gpt-oss Related to GPT-OSS models intel-gpu Related to Intel GPU kv-connector llama Related to Llama models mistral Related to Mistral models multi-modality Related to multi-modality (#4194) nvidia performance Performance-related issues qwen Related to Qwen models rocm Related to AMD ROCm rust structured-output tool-calling tpu Related to Google TPUs v1

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[Bug] ~17.5s engine-wide stall on large-to-small request shape transitions (NVFP4/b12x, GDN CuteDSL prefill kernel)

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