Hi MultiVelo team,
I have imported in the seurat WNN neighbors distance and idx files as numpy arrays, made sure the cell names matched, but when I try to trun the mv.knn_smooth_chrom() function, I get the following error:
TypingError: Failed in nopython mode pipeline (step: nopython frontend)
No conversion from array(float32, 2d, F) to array(float32, 2d, C) for 'knn_dists', defined at None
File "../../../../envs/scvelo/lib/python3.9/site-packages/umap/umap_.py", line 351:
def nearest_neighbors(
<source elided>
@numba.njit(
^
During: typing of argument at /data/bhlee/envs/scvelo/lib/python3.9/site-packages/umap/umap_.py (351)
File "../../../../envs/scvelo/lib/python3.9/site-packages/umap/umap_.py", line 351:
def nearest_neighbors(
<source elided>
@numba.njit(
^
It looks like this used to be an issue with the umap package version, but seems like it should have already been solved: lmcinnes/umap#324
I tried downgrading to another umap version as well, but then I can't important multivelo.
Any idea what is going on?
Much appreciated!
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Hi MultiVelo team,
I have imported in the seurat WNN neighbors distance and idx files as numpy arrays, made sure the cell names matched, but when I try to trun the mv.knn_smooth_chrom() function, I get the following error:
It looks like this used to be an issue with the umap package version, but seems like it should have already been solved: lmcinnes/umap#324
I tried downgrading to another umap version as well, but then I can't important multivelo.
Any idea what is going on?
Much appreciated!