Hapdup 0.12

• Minor updates and bug fixes

Hapdup 0.10

• Margin version update
• Option to use unphased reads for polishing
• Het insertion polishing improvement
• A few small bigfixes

Hapdup 0.6

• Fixed issue with PEPPER model quantization causing the pipeline to hang on some systems
• Speed-up of the last breakpoint analysis part of the pipeline, causing bottlenecks on some datasets

Hapdup 0.5

• Update to PEPPER 0.7
• Added new option --pepper-model for custom pepper models
• Added new option --bam-index to provide a non-standard path to alignment index file

HapDup 0.4

• Added HiFi reads support