Portpatch 6.1.0 -> 7.0.0-SNAPSHOT#123
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juanfeSanahuja merged 63 commits intodevelopfrom Oct 27, 2025
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TASK-7693-rel - Upgrade Ubuntu image on GitHub Actions
TASK-7524 - Add new Variant output format: JSON_SPARSE
…tribution management Added central-publishing-maven-plugin #TASK-7783
…ds with -SNAPSHOT #TASK-7783
…pshots #TASK-7783
…atype Central releases and snapshots #TASK-7783
Portpatch 5.6.0 -> 6.1.0-SNAPSHOT
TASK-7881 - Can't filter by "not equals" with an "AND" operator
TASK-7883 - Modify OpenCGA - CellBase dependency
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Task linked: TASK-7786 Port Patch 3.1.0 -> 4.0.0 |
jtarraga
approved these changes
Sep 15, 2025
![github-advanced-security[bot]](https://avatars.githubusercontent.com/in/57789?s=60&v=4){kind=small}
| gpg-passphrase: MAVEN_GPG_PASSPHRASE # env variable for GPG private key passphrase | ||
| - name: Deploy to Maven Central repository | ||
| run: mvn clean deploy -DskipTests -P deploy-maven ${{ inputs.maven_opts }} --no-transfer-progress | ||
| run: mvn clean deploy -DskipTests -Pdeploy-maven ${{ inputs.maven_opts }} --no-transfer-progress |
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GitHub Actions should not be vulnerable to script injections High
| java-version: '8' | ||
| - name: Deploy to GitHub Packages repository | ||
| run: mvn clean deploy -DskipTests -P deploy-github ${{ inputs.maven_opts }} --no-transfer-progress | ||
| run: mvn clean deploy -DskipTests -Pdeploy-github ${{ inputs.maven_opts }} --no-transfer-progress |
Check failure
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| cd opencga-enterprise | ||
| ln -s ../opencga opencga-home | ||
| ./build.sh -t -l runShortTests -b -s -T ${{ inputs.task }} -c localhost:27018 -H hdp3.1 | ||
| ./build.sh -t -l runShortTests -b -s -T ${{ inputs.task }} |
Check failure
Code scanning / SonarCloud
GitHub Actions should not be vulnerable to script injections High test
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Automated portpatch from tag v6.1.0 to branch develop
ClickUp Task: https://app.clickup.com/t/36631768/TASK-7786